Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG381_RS22915 Genome accession   NZ_CP107869
Coordinates   5068144..5068803 (+) Length   219 a.a.
NCBI ID   WP_327717957.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5063144..5073803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS22895 (OG381_22905) - 5063346..5064770 (+) 1425 WP_266825211.1 ATP-binding protein -
  OG381_RS22900 (OG381_22910) - 5064788..5066227 (+) 1440 WP_327722530.1 type VI secretion protein -
  OG381_RS22905 (OG381_22915) - 5066247..5066810 (-) 564 WP_327717955.1 GNAT family N-acetyltransferase -
  OG381_RS22910 (OG381_22920) - 5066906..5068147 (+) 1242 WP_327717956.1 histidine kinase -
  OG381_RS22915 (OG381_22925) vraR 5068144..5068803 (+) 660 WP_327717957.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23844.33 Da        Isoelectric Point: 5.6640

>NTDB_id=647549 OG381_RS22915 WP_327717957.1 5068144..5068803(+) (vraR) [Streptomyces sp. NBC_00490]
MTTVLIADDQPLQRFGFRMLLESQDDMTVLGEAQNGTEAIRMTAELHPDVVLMDVRMPGLDGIEATRRIVAAGARTRVLI
LTTFDLDEYAYAGLRAGASGFLVKDAQPEDLLSGIRAVATGDAVVAPSLTRRLLDAYAHHLPAETPTAEPADSRLAALTD
REREILTVIGKGWTNTEISTRLHLAESTVKTHVGRILAKTGSRDRIQAVILAYETKLVK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=647549 OG381_RS22915 WP_327717957.1 5068144..5068803(+) (vraR) [Streptomyces sp. NBC_00490]
GTGACGACCGTCCTCATCGCCGACGACCAGCCCCTCCAGCGCTTCGGCTTCCGCATGCTGCTGGAGAGCCAGGACGACAT
GACGGTCCTCGGCGAAGCCCAGAACGGCACCGAGGCGATCCGTATGACAGCCGAGCTCCACCCCGACGTCGTCCTGATGG
ACGTCCGCATGCCCGGCCTCGACGGCATCGAGGCCACCCGCCGCATCGTCGCGGCCGGCGCCCGCACCCGCGTCCTGATC
CTCACGACCTTCGACCTGGACGAGTACGCCTACGCGGGCCTACGAGCCGGAGCCTCCGGCTTCCTGGTGAAGGACGCCCA
GCCGGAGGACCTGCTGTCAGGCATACGCGCGGTGGCCACGGGCGACGCGGTGGTCGCCCCGAGCCTGACCCGCCGCCTCT
TGGACGCCTACGCCCACCACCTCCCGGCGGAAACCCCGACCGCCGAACCGGCGGACTCACGCCTCGCGGCCCTCACCGAC
CGGGAACGCGAGATCCTGACAGTCATCGGCAAGGGCTGGACGAACACCGAGATATCCACCCGTCTGCACCTGGCCGAATC
GACGGTGAAAACCCATGTGGGCCGCATCCTGGCGAAGACGGGTTCCAGGGACCGGATCCAGGCGGTGATCCTGGCGTACG
AAACAAAGCTGGTGAAATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.574

98.63

0.361