Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG381_RS17310 Genome accession   NZ_CP107869
Coordinates   3819536..3820216 (-) Length   226 a.a.
NCBI ID   WP_327716997.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3814536..3825216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS17285 (OG381_17295) - 3815055..3816530 (+) 1476 WP_327716992.1 alpha/beta hydrolase -
  OG381_RS17290 (OG381_17300) - 3816518..3817648 (-) 1131 WP_327716993.1 abortive phage infection protein -
  OG381_RS17295 (OG381_17305) - 3817717..3817962 (+) 246 WP_327716994.1 hypothetical protein -
  OG381_RS17300 (OG381_17310) - 3818034..3818483 (-) 450 WP_327716995.1 protein-tyrosine phosphatase family protein -
  OG381_RS17305 (OG381_17315) - 3818585..3819520 (+) 936 WP_327716996.1 dihydrodipicolinate synthase family protein -
  OG381_RS17310 (OG381_17320) vraR 3819536..3820216 (-) 681 WP_327716997.1 response regulator transcription factor Regulator
  OG381_RS17315 (OG381_17325) - 3820213..3821415 (-) 1203 WP_327716998.1 histidine kinase -
  OG381_RS17320 (OG381_17330) - 3821500..3823587 (-) 2088 WP_327716999.1 MMPL family transporter -
  OG381_RS17325 (OG381_17335) - 3823763..3824458 (-) 696 WP_327717000.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 23971.71 Da        Isoelectric Point: 4.7446

>NTDB_id=647537 OG381_RS17310 WP_327716997.1 3819536..3820216(-) (vraR) [Streptomyces sp. NBC_00490]
MTIRVLLADDQTLVRAAFAMLVESARDMEVVGEAATGREAVDLARRARPDLVVMDIRMPDLDGIEATRLIAADEALAGVK
VLVLTTYDTDEYIIEALRAGASGFLVKDTRPAELLAAIRTVTAGESLLSPGPTARLITRLLSQTPATAPALSSGPECLSE
REREVLVLVGRGLNNAEIAEALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGMVTPGTVREG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=647537 OG381_RS17310 WP_327716997.1 3819536..3820216(-) (vraR) [Streptomyces sp. NBC_00490]
ATGACGATCCGCGTGCTGCTCGCTGACGACCAGACCCTCGTACGGGCCGCGTTCGCGATGCTCGTCGAGTCGGCACGGGA
CATGGAGGTGGTGGGGGAGGCGGCGACCGGCCGGGAGGCGGTGGACCTGGCGCGACGGGCCCGGCCCGACCTCGTCGTCA
TGGACATCCGGATGCCCGACCTCGACGGCATCGAGGCGACCCGGCTGATCGCGGCGGACGAGGCACTGGCCGGGGTGAAG
GTGCTGGTCCTGACGACGTACGACACCGACGAGTACATCATCGAGGCGTTGCGTGCGGGCGCCTCGGGTTTCCTGGTGAA
GGACACCAGACCGGCGGAGCTGCTGGCCGCGATCCGTACGGTGACGGCGGGGGAGTCGCTGTTGTCACCGGGCCCGACGG
CGCGCCTGATCACCCGCCTGCTGAGCCAGACACCGGCGACCGCGCCGGCGCTCTCGAGTGGTCCGGAGTGCTTGTCGGAA
CGGGAGCGTGAGGTGCTCGTGCTGGTCGGGCGGGGGCTCAACAACGCCGAGATCGCCGAGGCGTTGGGGCTGAGTCCGCT
GACCGCGAAGACCCATGTCAGCCGGATCATGGGGAAGCTGGGGGCGCGTGACCGGGCGCAGTTGGTGATCGTGGCGTACG
AGTCGGGGATGGTCACGCCGGGGACTGTGCGCGAGGGCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.073

96.46

0.367