Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG381_RS17015 Genome accession   NZ_CP107869
Coordinates   3753476..3755404 (+) Length   642 a.a.
NCBI ID   WP_327716945.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3748476..3760404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS16980 (OG381_16990) - 3748619..3749095 (+) 477 WP_327716942.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG381_RS17000 (OG381_17010) - 3749719..3750024 (+) 306 WP_307030964.1 YtxH domain-containing protein -
  OG381_RS17005 (OG381_17015) - 3750142..3751581 (+) 1440 WP_327716943.1 FGGY family carbohydrate kinase -
  OG381_RS17010 (OG381_17020) rcrP 3751743..3753476 (+) 1734 WP_327716944.1 ABC transporter ATP-binding protein Regulator
  OG381_RS17015 (OG381_17025) rcrQ 3753476..3755404 (+) 1929 WP_327716945.1 ABC transporter ATP-binding protein Regulator
  OG381_RS17020 (OG381_17030) - 3755554..3756849 (-) 1296 WP_327716946.1 RNA polymerase sigma factor -
  OG381_RS17025 (OG381_17035) dnaG 3756954..3758855 (-) 1902 WP_327716947.1 DNA primase -
  OG381_RS17030 (OG381_17040) - 3758961..3760226 (-) 1266 WP_327716948.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69979.45 Da        Isoelectric Point: 5.6955

>NTDB_id=647536 OG381_RS17015 WP_327716945.1 3753476..3755404(+) (rcrQ) [Streptomyces sp. NBC_00490]
MAGPMGRMMAGTGPDHRSMDFKVSGRRLLSHFRPERFTVYALVFCVFVSVGLSVVGPKILGEATDLVFAGIVGRQMEPGA
SKEQVLQAMRERGDGQVADMLRSTDFTPGEGIDFGAVGHVLLIALVVFVAAGLLMLVATRLVNRVVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLNQSMGQLINSILTIIGVLAMMFWVSWLLALVALVTVPLSFVIATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAQQFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPMPGERPAELRGRVALE
GVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGSHGDLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=647536 OG381_RS17015 WP_327716945.1 3753476..3755404(+) (rcrQ) [Streptomyces sp. NBC_00490]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGGACCGGCCCCGATCACCGGTCGATGGACTTCAAGGTGTCGGGACGGCG
GCTCCTGTCCCACTTCCGGCCGGAGCGGTTCACGGTCTACGCGCTGGTGTTCTGTGTGTTCGTCAGCGTGGGTCTGTCGG
TCGTCGGGCCGAAGATCCTCGGCGAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGACGGCAGATGGAGCCCGGCGCC
TCGAAGGAGCAGGTGCTCCAGGCGATGCGGGAGCGCGGGGACGGCCAGGTCGCCGACATGCTCCGCAGCACCGACTTCAC
CCCGGGCGAGGGCATCGACTTCGGTGCCGTCGGCCATGTCCTGCTGATCGCGCTCGTCGTGTTCGTCGCCGCCGGGCTGC
TGATGCTGGTGGCGACGCGGCTGGTGAACCGGGTCGTCAACCGGACCATGTTCCGGATGCGGGAGGACGTACAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGGGCGACGAACGACATCGACAA
CATCGGGCAGACCCTCAACCAGTCGATGGGCCAGCTCATCAACTCGATCCTCACCATCATCGGGGTGCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGCTCGTCACCGTGCCGCTGTCGTTCGTGATCGCCACGCGCGTCGGCAAG
CGGTCTCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTCGCC
GTGGTGGGTGGCCTGCGCGTCGCCTCCGGCACGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTCGCCTCGGCCGAGCGGATCTTCGAGC
TGCTCGACGCGGAGGAGCAGGAGGCCGACCCGATGCCGGGCGAGCGGCCCGCCGAGCTGCGGGGGCGGGTGGCGCTGGAA
GGCGTGTCCTTCCGGTACGACCCCGAGAAGCCGCTCATCGAGGATCTGTCGCTCAAGGTGGAGCCGGGGCACACGGTCGC
GATCGTGGGGCCGACGGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGGCGCA
TCACTCTCGACGGGGTCGACATCGCGCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGAGGTCACCCGGGGCGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCGGACCGGTTCGTCCGGACGCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGCTCGG
GGGTCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACGTCGTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAACTGGCGCACGGACGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATTCTGGTGATGGAGAACGGGTCGATCGTGGAACAGG
GTTCACACGGGGACCTGTTGGCCGCGGACGGCGCGTACGCGCGGCTGTACAAGGCACAGTTCGCGCAGGCGGTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.736

93.302

0.389