Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG381_RS05010 Genome accession   NZ_CP107869
Coordinates   1131805..1132794 (-) Length   329 a.a.
NCBI ID   WP_327722383.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126805..1137794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS04990 (OG381_04985) - 1127211..1128275 (-) 1065 WP_327714872.1 ketoacyl-ACP synthase III family protein -
  OG381_RS04995 (OG381_04990) - 1128272..1129522 (-) 1251 WP_327714873.1 sedoheptulose 7-phosphate cyclase -
  OG381_RS05000 (OG381_04995) - 1129770..1130381 (+) 612 WP_327714874.1 TetR/AcrR family transcriptional regulator -
  OG381_RS05005 (OG381_05000) - 1130647..1131504 (+) 858 WP_327714875.1 hypothetical protein -
  OG381_RS05010 (OG381_05005) cytR 1131805..1132794 (-) 990 WP_327722383.1 LacI family DNA-binding transcriptional regulator Regulator
  OG381_RS05015 (OG381_05010) - 1133115..1134041 (+) 927 WP_307035261.1 sugar ABC transporter permease -
  OG381_RS05020 (OG381_05015) - 1134046..1134972 (+) 927 WP_327714876.1 carbohydrate ABC transporter permease -
  OG381_RS05025 (OG381_05020) - 1135068..1136405 (+) 1338 WP_327714877.1 sugar ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35285.93 Da        Isoelectric Point: 5.6254

>NTDB_id=647516 OG381_RS05010 WP_327722383.1 1131805..1132794(-) (cytR) [Streptomyces sp. NBC_00490]
MADVAQLAGVSSQTVSRVSNGYAGVNEETRRQVLAAMRELGYRPNSAARALKRGEFRTLGVITFTLSTTGNVRTLEAIAT
AAAAEGYAVTLLPVAVPTQDEVRGAFSRLGELAVDAVIVIMEVHLLDAATINMPPRVQVVVADSDAGERYTVVDTDQVGG
TRMAVEHLLGLGHDTVWHLAGPEGSYAAQRRTDAWQATLSDAGRRIPPLVRGDWSAESGYRAGLELAAQEDCTAVFTAND
QMALGLLRALHERGRRVPEDVSVIGFDDIAEASSFLPPLTTVHQDFAEVGRLCVQAVLRKMRHDDATHGTTLVPTRLIVR
ESTAPPAVR

Nucleotide


Download         Length: 990 bp        

>NTDB_id=647516 OG381_RS05010 WP_327722383.1 1131805..1132794(-) (cytR) [Streptomyces sp. NBC_00490]
ATGGCCGACGTGGCCCAACTGGCCGGGGTGTCCTCGCAGACCGTCTCGCGCGTGTCCAACGGTTACGCGGGTGTCAACGA
GGAGACGCGCCGCCAAGTCCTCGCCGCTATGCGAGAGCTGGGCTACCGTCCCAACAGCGCCGCCCGCGCCCTGAAGCGCG
GCGAGTTCCGCACCCTGGGCGTCATCACCTTCACTCTCTCCACGACCGGCAACGTCCGCACCCTGGAGGCGATCGCCACC
GCCGCGGCGGCCGAGGGGTACGCGGTGACCCTGCTGCCGGTCGCCGTCCCCACCCAGGACGAGGTGCGCGGCGCCTTCTC
CCGGCTCGGGGAACTCGCCGTCGACGCGGTGATCGTCATCATGGAGGTGCACCTCCTGGACGCGGCCACCATCAACATGC
CGCCCCGTGTCCAGGTGGTCGTCGCCGACTCCGACGCGGGGGAGCGGTACACGGTCGTCGACACCGACCAGGTCGGCGGC
ACGCGCATGGCCGTCGAGCATCTGCTCGGGCTCGGCCACGACACGGTCTGGCACCTCGCGGGCCCCGAGGGCTCCTACGC
CGCCCAGCGCCGTACCGACGCCTGGCAGGCCACGCTCAGCGACGCGGGCCGGCGGATTCCGCCCCTGGTGCGGGGTGACT
GGTCGGCGGAGTCGGGCTACCGGGCGGGCCTGGAGCTGGCCGCGCAGGAGGACTGCACGGCGGTCTTCACGGCCAACGAC
CAGATGGCCCTGGGTCTGCTGCGTGCCCTGCATGAACGCGGCCGGCGCGTCCCCGAGGACGTCAGCGTCATCGGCTTCGA
CGACATCGCCGAGGCGTCGTCCTTCCTGCCGCCCCTCACGACGGTCCATCAGGACTTCGCGGAGGTCGGCCGCCTCTGCG
TCCAGGCGGTCCTGCGGAAGATGCGCCACGACGACGCGACGCACGGCACGACGCTTGTGCCGACGCGTCTGATAGTGCGG
GAGAGCACGGCGCCACCCGCGGTGCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(1-45)

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.103

100

0.362