Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L1O02_RS04345 Genome accession   NZ_CP091067
Coordinates   925320..926687 (+) Length   455 a.a.
NCBI ID   WP_011063580.1    Uniprot ID   A0A2C9ETR8
Organism   Pseudomonas sp. BC42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920320..931687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O02_RS04325 (L1O02_04325) - 921578..922354 (+) 777 WP_060841190.1 ferredoxin--NADP reductase -
  L1O02_RS04330 (L1O02_04330) mscL 922404..922817 (-) 414 WP_060841189.1 large-conductance mechanosensitive channel protein MscL -
  L1O02_RS04335 (L1O02_04335) - 923105..924646 (+) 1542 WP_060841188.1 catalase -
  L1O02_RS04340 (L1O02_04340) - 924714..925274 (+) 561 WP_060841187.1 ankyrin repeat domain-containing protein -
  L1O02_RS04345 (L1O02_04345) radA 925320..926687 (+) 1368 WP_011063580.1 DNA repair protein RadA Machinery gene
  L1O02_RS04350 (L1O02_04350) - 926727..927449 (+) 723 WP_108546243.1 hypothetical protein -
  L1O02_RS04355 (L1O02_04355) - 927466..927834 (-) 369 WP_060841185.1 PilZ domain-containing protein -
  L1O02_RS04360 (L1O02_04360) - 928074..930140 (+) 2067 WP_060841184.1 carbon starvation CstA family protein -
  L1O02_RS04365 (L1O02_04365) - 930156..930353 (+) 198 WP_007937254.1 YbdD/YjiX family protein -
  L1O02_RS04370 (L1O02_04370) yjiA 930467..931438 (+) 972 WP_108546206.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48740.27 Da        Isoelectric Point: 7.1317

>NTDB_id=647471 L1O02_RS04345 WP_011063580.1 925320..926687(+) (radA) [Pseudomonas sp. BC42]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLKIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=647471 L1O02_RS04345 WP_011063580.1 925320..926687(+) (radA) [Pseudomonas sp. BC42]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCCACCTTTCCCAAATGGGCCGGGCAATGCGGTGAGTG
CGGGGCCTGGAACACCCTGACCGAGACCATGATCGAAAGTGGCGGCGCCGCGGCACCTGCCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATCCCGCGTTTCTCCACCGCCTCTGGCGAACTC
GACCGGGTGCTGGGCGGTGGCCTGGTGGACGGATCGGTGGTGCTGATCGGCGGCGATCCGGGGATCGGCAAGTCGACCAT
CCTGCTGCAGACCCTGTGCAATATCGCCACGCGCATGCCGGCGCTCTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGGGTGGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGCTGCAATCGGCCCC
GGGCGGCGTGTCCCAGGTGCGCGAGAGCGCGGCCTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGGCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGGGAGTCCGATGGTCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTCGGTGCGGTCAATGAACTGGGCGTGTTCGG
CATGACCGACCGCGGTTTGAAGGAAGTCTCCAACCCTTCGGCGATTTTCCTCACCCGCGCCCAGGAAGAGGTGCCGGGCA
GCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTTCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGCCGGGTGACCCTCGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGTTGCATCGCCACGGCGGTAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAATCGTCCGCTGCCCCATGACTTGCTGGTGTTCGGCGAGGTGGGGCTGTCCGGC
GAAGTGCGTCCGGTGCCCAGCGGTCAGGAGCGCTTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAACGCACCGAAGGAGGCGCCGCCAGGCTTGAAGATCATTGCCGTGACCCGCCTGGAACAGGCGTTGGATGCGCTTT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9ETR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459