Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA87_RS24780 Genome accession   NZ_CP107867
Coordinates   5468724..5469392 (-) Length   222 a.a.
NCBI ID   WP_327662300.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00493     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5463724..5474392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA87_RS24780 (OHA87_24810) vraR 5468724..5469392 (-) 669 WP_327662300.1 response regulator transcription factor Regulator
  OHA87_RS24785 (OHA87_24815) - 5469389..5470645 (-) 1257 WP_327671091.1 histidine kinase -
  OHA87_RS24790 (OHA87_24820) - 5470704..5471489 (-) 786 WP_327671092.1 ABC transporter permease -
  OHA87_RS24795 (OHA87_24825) - 5471486..5472448 (-) 963 WP_327671093.1 ATP-binding cassette domain-containing protein -
  OHA87_RS24800 (OHA87_24830) - 5472554..5473102 (+) 549 WP_327671094.1 N-acetyltransferase -
  OHA87_RS24805 (OHA87_24835) - 5473099..5473701 (-) 603 WP_327671095.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23834.35 Da        Isoelectric Point: 4.8245

>NTDB_id=647458 OHA87_RS24780 WP_327662300.1 5468724..5469392(-) (vraR) [Streptomyces sp. NBC_00493]
MTTVLIVDDQPMQRFGFRMLLESQDDLRVAGEAGTGTEAVRLAAELAPDVVLMDIRMPGMDGIEATRRITASGPEGPRIL
ILTTFDMDEYAYAGLRAGASGFLIKDALPEELLAGIRAVAAGDAIVAPSLTRRLLDAYVHHLPADAGTPPAADPRIASLT
DREREILTVIAQGWSNSEIAQRLHLAESTVKTHVSRILAKTGARDRVQAVIVAYDAKLVEPA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=647458 OHA87_RS24780 WP_327662300.1 5468724..5469392(-) (vraR) [Streptomyces sp. NBC_00493]
GTGACGACCGTCCTCATCGTCGACGACCAGCCCATGCAGCGCTTCGGCTTCCGCATGCTCCTGGAGAGCCAGGACGACCT
ACGGGTCGCGGGCGAGGCGGGCACGGGCACGGAGGCGGTCCGCCTCGCGGCCGAGCTCGCCCCCGACGTGGTCCTGATGG
ACATCCGCATGCCCGGCATGGACGGCATCGAGGCGACTCGCCGCATCACCGCCTCGGGCCCCGAGGGCCCGCGCATCCTG
ATCCTCACCACGTTCGACATGGACGAGTACGCGTACGCGGGCCTGCGGGCCGGAGCCTCCGGCTTCCTCATCAAGGACGC
ACTCCCCGAGGAACTCCTGGCAGGCATCCGCGCGGTGGCCGCCGGCGACGCGATCGTCGCCCCCAGCCTGACCCGCCGCC
TCCTGGACGCGTACGTCCACCATCTCCCGGCGGACGCGGGTACTCCCCCGGCTGCCGATCCACGCATCGCCTCCCTCACG
GACCGCGAACGCGAGATCCTCACGGTCATCGCCCAGGGCTGGAGCAATTCGGAAATCGCTCAGCGCCTGCACCTCGCGGA
ATCGACGGTGAAGACCCATGTCTCCCGCATTCTGGCGAAGACGGGGGCGCGGGACAGAGTGCAGGCGGTGATCGTGGCGT
ACGACGCGAAACTGGTGGAGCCCGCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.788

97.748

0.369