Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG561_RS44365 Genome accession   NZ_CP107865
Coordinates   10233941..10234594 (-) Length   217 a.a.
NCBI ID   WP_327732081.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00496     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10228941..10239594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG561_RS44345 (OG561_44435) - 10229256..10229624 (-) 369 WP_326574986.1 metalloregulator ArsR/SmtB family transcription factor -
  OG561_RS44350 (OG561_44440) - 10229682..10231646 (+) 1965 WP_327732083.1 heavy metal translocating P-type ATPase -
  OG561_RS44355 (OG561_44445) - 10231827..10233311 (+) 1485 WP_327732082.1 AlkA N-terminal domain-containing protein -
  OG561_RS44360 (OG561_44450) - 10233396..10233887 (+) 492 WP_327727043.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG561_RS44365 (OG561_44455) vraR 10233941..10234594 (-) 654 WP_327732081.1 response regulator transcription factor Regulator
  OG561_RS44370 (OG561_44460) - 10234678..10235943 (-) 1266 WP_327732080.1 sensor histidine kinase -
  OG561_RS44375 (OG561_44465) - 10236184..10236972 (+) 789 WP_327727042.1 class I SAM-dependent methyltransferase -
  OG561_RS44380 (OG561_44470) - 10237037..10237771 (-) 735 WP_327727041.1 Sir2 family NAD-dependent protein deacetylase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 22944.36 Da        Isoelectric Point: 7.3628

>NTDB_id=647404 OG561_RS44365 WP_327732081.1 10233941..10234594(-) (vraR) [Streptomyces sp. NBC_00496]
MRLLLCDDHAVVRAGLRALLSSADGIEVVGEAGTGEEALALAARLRPDVVLMDLQLGDGVDGVTATRRLTSRPADAQHSP
TAPPAPAPRVLVLTMFDTDADISRAIEAGATGYLLKAERPDELFAAIRDAAAGRTALSAPVADRLLAQLRSPRPALSERE
HEILGQLARGLGNREIARALFISEATVKTHLGRIYGKLGVETRSGAVAVAKERRLLP

Nucleotide


Download         Length: 654 bp        

>NTDB_id=647404 OG561_RS44365 WP_327732081.1 10233941..10234594(-) (vraR) [Streptomyces sp. NBC_00496]
GTGCGGCTCCTGCTGTGCGACGACCACGCCGTCGTACGCGCCGGGCTGCGCGCGCTGCTGTCCAGTGCCGACGGCATCGA
GGTGGTCGGTGAGGCGGGCACCGGTGAGGAGGCGCTCGCCCTGGCCGCCCGCCTGCGCCCCGACGTCGTACTGATGGACC
TGCAACTCGGCGACGGCGTGGACGGCGTGACGGCCACCCGTCGGCTGACCTCACGGCCGGCCGACGCCCAGCACTCCCCC
ACCGCCCCGCCCGCTCCGGCCCCCCGCGTCCTCGTGCTCACCATGTTCGACACCGACGCCGACATCAGCCGTGCCATCGA
AGCGGGGGCCACCGGCTATCTCCTCAAGGCCGAGCGGCCCGACGAACTGTTCGCGGCGATCCGCGACGCCGCGGCCGGCC
GTACCGCGCTGTCGGCGCCGGTGGCCGACCGGCTGCTGGCCCAACTTCGCAGCCCACGGCCCGCGTTGTCCGAGCGCGAG
CACGAGATCCTCGGTCAGCTGGCCCGTGGCCTGGGCAACCGGGAGATAGCGCGAGCCCTCTTCATCAGCGAGGCGACCGT
CAAGACCCACCTCGGCCGCATCTACGGCAAGCTGGGCGTGGAGACCCGGTCGGGCGCGGTGGCCGTGGCGAAGGAGCGCC
GCCTGCTGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-128)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.364

100

0.369