Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG561_RS10530 Genome accession   NZ_CP107865
Coordinates   2490540..2491316 (+) Length   258 a.a.
NCBI ID   WP_020114122.1    Uniprot ID   A0A5P8KDE7
Organism   Streptomyces sp. NBC_00496     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2485540..2496316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG561_RS10515 (OG561_10530) - 2485644..2486246 (+) 603 WP_327727531.1 TerD family protein -
  OG561_RS10520 (OG561_10535) - 2486361..2489255 (-) 2895 WP_326576324.1 vitamin B12-dependent ribonucleotide reductase -
  OG561_RS10525 (OG561_10540) nrdR 2489415..2489978 (-) 564 WP_327727532.1 transcriptional regulator NrdR -
  OG561_RS10530 (OG561_10545) dinR/lexA 2490540..2491316 (+) 777 WP_020114122.1 transcriptional repressor LexA Regulator
  OG561_RS10535 (OG561_10550) - 2491519..2493510 (-) 1992 WP_327727533.1 ATP-dependent DNA helicase -
  OG561_RS10540 (OG561_10555) - 2493714..2494457 (-) 744 WP_326576332.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27936.61 Da        Isoelectric Point: 7.0666

>NTDB_id=647342 OG561_RS10530 WP_020114122.1 2490540..2491316(+) (dinR/lexA) [Streptomyces sp. NBC_00496]
MTTTADSATITAQDRSQSRLEPVHAMNEATNHEGPKRALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEPI
PGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=647342 OG561_RS10530 WP_020114122.1 2490540..2491316(+) (dinR/lexA) [Streptomyces sp. NBC_00496]
GTGACCACCACCGCTGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAACCATGAAGGGCCCAAGCGAGCCTTGCCCGGCCGACCTCCAGGCATCAGGGCTGACAGCTCCGGGCTCA
CCGACCGGCAGCGCCGGGTCATCGAGGTGATCAGGGACTCGGTGCAGCGGCGCGGATACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACGTCCTCCGTGGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCTTGCGGCG
CGACCCGCACCGCCCGCGTGCGTACGAGGTCCGCGGCTCCGACCAGTCCTCGGCACAGCCGACGGACACGGCGGGCAAGC
CGGCCGCTTCGTACGTGCCGCTCGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCCGTGGAGGACGTG
TTCCCGCTTCCCCGCCAGTTGGTGGGCGACGGCGAGCTCTTCGTCCTGAAGGTCGTCGGTGACTCCATGATCGAGGCCGC
GATCTGTGACGGTGACTGGGTGACGGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTGGACG
GCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCCGCCTACGAGCCCATC
CCGGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTGCTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P8KDE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

81.395

0.376