Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1P11_RS15945 Genome accession   NZ_CP091044
Coordinates   3171224..3171853 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain STEC346     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3166224..3176853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P11_RS15930 helD 3166466..3168520 (-) 2055 WP_001774801.1 DNA helicase IV -
  L1P11_RS15935 yccF 3168643..3169089 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L1P11_RS15940 yccS 3169099..3171261 (+) 2163 WP_001774800.1 YccS family putative transporter -
  L1P11_RS15945 sxy/tfoX 3171224..3171853 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L1P11_RS15950 sulA 3172072..3172581 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L1P11_RS15955 ompA 3172938..3173990 (+) 1053 WP_001361736.1 porin OmpA -
  L1P11_RS15960 matP 3174066..3174518 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L1P11_RS15965 ycbZ 3174704..3176464 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=647317 L1P11_RS15945 WP_000839153.1 3171224..3171853(-) (sxy/tfoX) [Escherichia coli strain STEC346]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=647317 L1P11_RS15945 WP_000839153.1 3171224..3171853(-) (sxy/tfoX) [Escherichia coli strain STEC346]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1