Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0P89_RS08950 Genome accession   NZ_CP091037
Coordinates   2013013..2014374 (-) Length   453 a.a.
NCBI ID   WP_235264758.1    Uniprot ID   -
Organism   Allomuricauda sp. SCSIO 65647     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008013..2019374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P89_RS08935 (L0P89_08935) - 2008935..2009696 (+) 762 WP_235264755.1 exodeoxyribonuclease III -
  L0P89_RS08940 (L0P89_08940) - 2009762..2010802 (+) 1041 WP_235264756.1 aldo/keto reductase -
  L0P89_RS08945 (L0P89_08945) - 2010799..2012970 (-) 2172 WP_235264757.1 PQQ-binding-like beta-propeller repeat protein -
  L0P89_RS08950 (L0P89_08950) radA 2013013..2014374 (-) 1362 WP_235264758.1 DNA repair protein RadA Machinery gene
  L0P89_RS08955 (L0P89_08955) - 2014488..2015630 (-) 1143 WP_235264759.1 alpha/beta hydrolase -
  L0P89_RS08960 (L0P89_08960) - 2015654..2016619 (-) 966 WP_235264760.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  L0P89_RS08965 (L0P89_08965) panD 2016622..2016972 (-) 351 WP_235264761.1 aspartate 1-decarboxylase -
  L0P89_RS08970 (L0P89_08970) panC 2016986..2017834 (-) 849 WP_235264762.1 pantoate--beta-alanine ligase -
  L0P89_RS08975 (L0P89_08975) - 2017933..2018742 (+) 810 WP_235264763.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49712.39 Da        Isoelectric Point: 6.5081

>NTDB_id=647299 L0P89_RS08950 WP_235264758.1 2013013..2014374(-) (radA) [Allomuricauda sp. SCSIO 65647]
MAKTKTAFFCQNCGAQYAKWVGQCTACKQWNTVVEEVVQKEEKQTWRSSDSPIKKAPRPIRIDEIGNDREIRLDTLDQEF
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKLPFKTLYVSGEESQGQIKMRANRMNAENPNCYILTETKTQHIFQQL
GTIEPDLVIIDSIQTLHSDYIDSAAGSISQIRECTAELIKFAKESNTPVILVGHITKDGIIAGPKILEHMVDTVLQFEGD
RNYVYRIIRSLKNRFGSTAELGIYEMLGNGLREVNNPSEVLISKNEEELSGTAIAATIEGMRPLLIEIQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGISIDDPATDLAVIAAILSSNADIPIEKGICFAAEVGLAGEI
RPVQRIDQRIMEAEKLGFSTIFVSKSNKIGLKNLKVEVRLVSKIEEVVGYLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=647299 L0P89_RS08950 WP_235264758.1 2013013..2014374(-) (radA) [Allomuricauda sp. SCSIO 65647]
ATGGCCAAGACCAAAACTGCTTTCTTCTGTCAGAACTGTGGCGCACAATATGCCAAATGGGTAGGCCAATGCACGGCCTG
CAAGCAATGGAATACCGTGGTGGAAGAGGTCGTTCAAAAAGAGGAAAAACAGACATGGCGGTCAAGTGATTCCCCAATCA
AAAAAGCACCCCGGCCCATACGAATTGATGAGATCGGTAACGACCGCGAAATAAGGTTGGATACTTTGGACCAAGAGTTC
AATCGGGTGCTGGGGGGCGGACTCGTACCGGGGTCGTTGACCCTGTTGGGGGGTGAGCCGGGCATTGGCAAGAGCACCTT
GTTGCTACAGATTGCCCTTAAACTTCCGTTCAAAACGCTATATGTCTCAGGTGAGGAAAGCCAAGGTCAAATCAAGATGC
GGGCCAATAGAATGAATGCTGAAAACCCGAACTGTTATATTTTGACCGAGACAAAAACGCAGCACATTTTTCAACAGTTG
GGCACTATAGAACCCGATTTGGTCATCATCGACTCCATTCAGACATTACATTCTGATTATATCGATTCAGCGGCCGGAAG
CATTTCGCAAATCCGTGAGTGTACGGCAGAGCTTATAAAGTTTGCCAAAGAAAGTAACACCCCGGTTATCTTGGTGGGGC
ACATTACCAAAGATGGCATAATCGCCGGCCCCAAGATATTGGAGCATATGGTCGACACCGTCTTACAGTTCGAAGGTGAC
CGCAATTATGTGTACCGCATCATTCGGTCGCTTAAAAACCGTTTTGGTTCGACAGCTGAACTGGGCATTTACGAGATGCT
GGGCAATGGGCTTAGAGAAGTGAACAACCCCTCAGAAGTGTTGATCTCGAAAAACGAAGAAGAGCTGAGTGGCACAGCTA
TTGCGGCAACCATTGAGGGTATGCGCCCATTGCTCATCGAGATACAGGCCTTGGTAAGCACTGCCGTATATGGTACGCCC
CAACGTTCGGCCACGGGCTTTAATGCCAAACGGTTGAACATGCTTCTGGCCGTGCTTGAGAAAAGGGCAGGTTTTAAACT
GGCGGCCAAAGATGTTTTCTTGAATATCACGGGGGGCATTTCAATCGATGACCCCGCAACCGATCTGGCTGTGATCGCCG
CCATACTCTCGAGCAATGCCGACATCCCCATTGAAAAAGGAATATGCTTTGCCGCTGAGGTGGGGCTGGCGGGTGAGATA
CGGCCCGTGCAACGTATCGATCAACGCATTATGGAAGCTGAGAAACTGGGCTTTTCGACCATTTTTGTGTCTAAAAGCAA
CAAGATCGGTCTAAAAAACCTGAAAGTGGAAGTGCGGTTGGTCTCAAAAATCGAAGAAGTGGTCGGATACCTGTTCGGGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(77-219)

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.132

100

0.483
  radA Streptococcus pneumoniae R6

48.132

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.132

100

0.483
  radA Streptococcus mitis NCTC 12261

48.132

100

0.483
  radA Streptococcus pneumoniae D39

48.132

100

0.483
  radA Streptococcus mitis SK321

47.912

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

47.702

100

0.481