Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA47_RS22390 Genome accession   NZ_CP107862
Coordinates   4945851..4946519 (+) Length   222 a.a.
NCBI ID   WP_327662300.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00498     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4940851..4951519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA47_RS22365 (OHA47_22360) - 4941573..4942175 (+) 603 WP_327662296.1 NAD(P)H-dependent oxidoreductase -
  OHA47_RS22370 (OHA47_22365) - 4942172..4942720 (-) 549 WP_327662297.1 N-acetyltransferase -
  OHA47_RS22375 (OHA47_22370) - 4942826..4943758 (+) 933 WP_327662298.1 ATP-binding cassette domain-containing protein -
  OHA47_RS22380 (OHA47_22375) - 4943755..4944558 (+) 804 WP_266712420.1 ABC transporter permease subunit -
  OHA47_RS22385 (OHA47_22380) - 4944583..4945854 (+) 1272 WP_327662299.1 histidine kinase -
  OHA47_RS22390 (OHA47_22385) vraR 4945851..4946519 (+) 669 WP_327662300.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23834.35 Da        Isoelectric Point: 4.8245

>NTDB_id=647285 OHA47_RS22390 WP_327662300.1 4945851..4946519(+) (vraR) [Streptomyces sp. NBC_00498]
MTTVLIVDDQPMQRFGFRMLLESQDDLRVAGEAGTGTEAVRLAAELAPDVVLMDIRMPGMDGIEATRRITASGPEGPRIL
ILTTFDMDEYAYAGLRAGASGFLIKDALPEELLAGIRAVAAGDAIVAPSLTRRLLDAYVHHLPADAGTPPAADPRIASLT
DREREILTVIAQGWSNSEIAQRLHLAESTVKTHVSRILAKTGARDRVQAVIVAYDAKLVEPA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=647285 OHA47_RS22390 WP_327662300.1 4945851..4946519(+) (vraR) [Streptomyces sp. NBC_00498]
GTGACGACCGTCCTCATCGTCGACGACCAGCCCATGCAGCGCTTCGGCTTCCGCATGCTCCTGGAGAGCCAGGACGACCT
ACGGGTCGCGGGCGAGGCGGGCACGGGCACGGAGGCGGTCCGCCTCGCGGCCGAGCTCGCCCCCGACGTGGTCCTGATGG
ACATCCGCATGCCCGGCATGGACGGCATCGAGGCGACTCGCCGCATCACCGCCTCGGGCCCCGAGGGCCCGCGCATCCTG
ATCCTCACCACGTTCGACATGGACGAGTACGCGTACGCGGGCCTGCGGGCCGGCGCCTCCGGATTCCTCATCAAGGACGC
ACTCCCCGAGGAACTCCTGGCAGGCATCCGCGCGGTGGCCGCCGGCGACGCGATCGTCGCCCCCAGCCTGACCCGCCGCC
TCCTGGACGCGTACGTCCACCATCTCCCGGCGGACGCGGGTACTCCCCCGGCCGCCGATCCACGCATCGCCTCCCTCACG
GACCGCGAACGCGAGATCCTCACGGTCATCGCCCAGGGCTGGAGCAATTCGGAAATCGCTCAGCGCCTGCACCTCGCGGA
ATCGACGGTGAAGACCCATGTCTCCCGCATTCTGGCGAAGACTGGGGCGCGGGACAGAGTGCAGGCGGTGATCGTGGCAT
ACGACGCGAAACTGGTGGAGCCCGCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.788

97.748

0.369