Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1P14_RS15415 Genome accession   NZ_CP091029
Coordinates   3085527..3086156 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain STEC384     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3074449..3097341 3085527..3086156 within 0


Gene organization within MGE regions


Location: 3074449..3097341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P14_RS15355 - 3074449..3075468 (+) 1020 WP_001372523.1 tyrosine-type recombinase/integrase -
  L1P14_RS15360 yccA 3075876..3076535 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  L1P14_RS15365 tusE 3076626..3076955 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  L1P14_RS15370 yccX 3076952..3077230 (-) 279 WP_000048252.1 acylphosphatase -
  L1P14_RS15375 rlmI 3077325..3078515 (+) 1191 WP_000116297.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  L1P14_RS15380 hspQ 3078573..3078890 (+) 318 WP_001295356.1 heat shock protein HspQ -
  L1P14_RS15385 yccU 3078935..3079348 (-) 414 WP_000665217.1 CoA-binding protein -
  L1P14_RS15390 csgI 3079521..3080183 (+) 663 WP_000847791.1 DUF2057 family protein -
  L1P14_RS15395 mgsA 3080279..3080737 (+) 459 WP_000424181.1 methylglyoxal synthase -
  L1P14_RS15400 helD 3080769..3082823 (-) 2055 WP_000420536.1 DNA helicase IV -
  L1P14_RS15405 yccF 3082946..3083392 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L1P14_RS15410 yccS 3083402..3085564 (+) 2163 WP_000875015.1 YccS family putative transporter -
  L1P14_RS15415 sxy/tfoX 3085527..3086156 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L1P14_RS15420 sulA 3086375..3086884 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L1P14_RS15425 ompA 3087241..3088293 (+) 1053 WP_000750419.1 porin OmpA -
  L1P14_RS15430 matP 3088368..3088820 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  L1P14_RS15435 ycbZ 3089006..3090766 (+) 1761 WP_000156526.1 AAA family ATPase -
  L1P14_RS15440 fabA 3090835..3091353 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  L1P14_RS15445 rmf 3091423..3091590 (-) 168 WP_000828648.1 ribosome modulation factor -
  L1P14_RS15450 pqiC 3091846..3092409 (-) 564 WP_000759120.1 membrane integrity-associated transporter subunit PqiC -
  L1P14_RS15455 pqiB 3092406..3094046 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  L1P14_RS15460 pqiA 3094051..3095304 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  L1P14_RS15465 uup 3095434..3097341 (-) 1908 WP_000053122.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=647278 L1P14_RS15415 WP_000839153.1 3085527..3086156(-) (sxy/tfoX) [Escherichia coli strain STEC384]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=647278 L1P14_RS15415 WP_000839153.1 3085527..3086156(-) (sxy/tfoX) [Escherichia coli strain STEC384]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1