Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1P12_RS15815 Genome accession   NZ_CP091026
Coordinates   3181971..3182600 (-) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   A0A3T8SP29
Organism   Escherichia coli strain STEC383     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3176971..3187600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P12_RS15800 helD 3177213..3179267 (-) 2055 WP_000420537.1 DNA helicase IV -
  L1P12_RS15805 yccF 3179390..3179836 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L1P12_RS15810 yccS 3179846..3182008 (+) 2163 WP_072146309.1 YccS family putative transporter -
  L1P12_RS15815 sxy/tfoX 3181971..3182600 (-) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L1P12_RS15820 sulA 3182819..3183328 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L1P12_RS15825 ompA 3183685..3184737 (+) 1053 WP_000750419.1 porin OmpA -
  L1P12_RS15830 matP 3184812..3185264 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  L1P12_RS15835 ycbZ 3185450..3187210 (+) 1761 WP_096111192.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=647256 L1P12_RS15815 WP_000793792.1 3181971..3182600(-) (sxy/tfoX) [Escherichia coli strain STEC383]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=647256 L1P12_RS15815 WP_000793792.1 3181971..3182600(-) (sxy/tfoX) [Escherichia coli strain STEC383]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGCGCCATTATCGGGATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTAGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995