Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA47_RS06440 Genome accession   NZ_CP107862
Coordinates   1440745..1441737 (+) Length   330 a.a.
NCBI ID   WP_327666012.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00498     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1435745..1446737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA47_RS06425 (OHA47_06430) - 1436618..1437538 (-) 921 WP_327659813.1 carbohydrate ABC transporter permease -
  OHA47_RS06430 (OHA47_06435) - 1437555..1438616 (-) 1062 WP_327659814.1 sugar ABC transporter permease -
  OHA47_RS06435 (OHA47_06440) - 1438728..1440038 (-) 1311 WP_327659815.1 extracellular solute-binding protein -
  OHA47_RS06440 (OHA47_06445) cytR 1440745..1441737 (+) 993 WP_327666012.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA47_RS06445 (OHA47_06450) - 1441777..1441965 (-) 189 Protein_1288 DUF5994 family protein -
  OHA47_RS06450 (OHA47_06455) - 1442025..1442237 (+) 213 WP_327666013.1 hypothetical protein -
  OHA47_RS06455 (OHA47_06460) - 1442279..1442839 (-) 561 WP_327659816.1 TetR family transcriptional regulator -
  OHA47_RS06460 (OHA47_06465) - 1443002..1443700 (+) 699 WP_327659817.1 SDR family oxidoreductase -
  OHA47_RS06465 (OHA47_06470) - 1443770..1444825 (+) 1056 WP_327659818.1 aldo/keto reductase -
  OHA47_RS06470 (OHA47_06475) - 1444970..1445974 (+) 1005 WP_327659819.1 NADP-dependent oxidoreductase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35359.06 Da        Isoelectric Point: 5.7795

>NTDB_id=647243 OHA47_RS06440 WP_327666012.1 1440745..1441737(+) (cytR) [Streptomyces sp. NBC_00498]
MKTVAARAGVGRTTVSRVVNGSELVSEKAREAVLSAIAELGYVPNSVARGLVTSRTNAVALVIPESESRLGSEPYFSAVI
RGVSAALADTRTQLQLTLVRDQAERDQLTRSVAERRVDGVLLVSVHEHDVLPGLLESAGLPTVLAGRRREDDPLSYVCAD
NRGGAASAVRHLLDRGRRRIATVAGPQDMEVGRSRLRGCQEALVEAGIPAEEHLVEVGDFTEEGARAAMRSLLERAPDLD
AVFAASDLMAAGALLELRAQGRRVPEDVSVVGFEDSYLARHTNPPLTTVRQPTEEIGGTIARTLLREIGNPAVARTRLVL
DTELVVRESS

Nucleotide


Download         Length: 993 bp        

>NTDB_id=647243 OHA47_RS06440 WP_327666012.1 1440745..1441737(+) (cytR) [Streptomyces sp. NBC_00498]
ATCAAGACCGTGGCGGCGCGGGCAGGCGTCGGGCGCACCACCGTCTCCCGTGTGGTGAACGGCTCGGAGCTGGTCAGCGA
GAAGGCGCGGGAGGCCGTACTCAGCGCCATCGCGGAACTGGGCTACGTCCCCAATTCGGTGGCCCGCGGCCTGGTCACCA
GCCGTACCAACGCCGTCGCCCTGGTCATCCCCGAGTCCGAGAGCCGGCTCGGCTCGGAGCCCTACTTCTCCGCGGTGATC
CGCGGGGTGAGCGCCGCGCTCGCCGACACTCGCACCCAGCTCCAGCTGACACTCGTCCGCGACCAGGCCGAACGCGACCA
GCTCACCCGGTCCGTGGCCGAACGCCGGGTCGACGGCGTCCTGTTGGTCTCGGTGCACGAACACGACGTCCTGCCGGGCC
TGTTGGAATCGGCCGGCCTGCCGACCGTCCTCGCGGGCCGCCGCCGCGAGGACGACCCGCTCAGTTACGTCTGCGCCGAC
AACCGGGGCGGGGCCGCCAGCGCCGTGCGCCACCTCCTGGACCGGGGCCGGCGCCGGATCGCCACTGTCGCGGGCCCCCA
GGACATGGAGGTCGGCCGCAGCCGGTTGCGCGGCTGCCAGGAAGCACTCGTCGAGGCGGGCATCCCGGCGGAGGAACACC
TGGTCGAGGTCGGCGACTTCACCGAGGAAGGGGCGCGCGCGGCGATGCGTTCGCTACTTGAACGTGCCCCGGACCTGGAC
GCCGTGTTCGCCGCCTCCGACCTGATGGCCGCGGGCGCCCTCCTCGAACTGCGCGCCCAGGGTCGCCGCGTACCGGAGGA
TGTCTCGGTCGTCGGATTCGAGGACTCCTACCTCGCCCGCCACACCAACCCACCGCTCACGACGGTCCGCCAGCCCACGG
AGGAGATCGGCGGCACGATCGCCCGCACGCTCCTCCGCGAGATCGGGAACCCGGCGGTTGCGCGCACGCGGCTTGTGCTG
GATACGGAGCTGGTGGTGCGGGAGTCGTCGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-330)

Bacterial regulatory proteins, lacI family (LacI)

(1-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.735

100

0.382
  cytR Vibrio parahaemolyticus RIMD 2210633

35.103

100

0.361