Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1P13_RS15670 Genome accession   NZ_CP091024
Coordinates   3136019..3136648 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain STEC379     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3124941..3147833 3136019..3136648 within 0


Gene organization within MGE regions


Location: 3124941..3147833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P13_RS15610 - 3124941..3125960 (+) 1020 WP_001372523.1 tyrosine-type recombinase/integrase -
  L1P13_RS15615 yccA 3126368..3127027 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  L1P13_RS15620 tusE 3127118..3127447 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  L1P13_RS15625 yccX 3127444..3127722 (-) 279 WP_000048252.1 acylphosphatase -
  L1P13_RS15630 rlmI 3127817..3129007 (+) 1191 WP_000116297.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  L1P13_RS15635 hspQ 3129065..3129382 (+) 318 WP_001295356.1 heat shock protein HspQ -
  L1P13_RS15640 yccU 3129427..3129840 (-) 414 WP_000665217.1 CoA-binding protein -
  L1P13_RS15645 csgI 3130013..3130675 (+) 663 WP_000847791.1 DUF2057 family protein -
  L1P13_RS15650 mgsA 3130771..3131229 (+) 459 WP_000424181.1 methylglyoxal synthase -
  L1P13_RS15655 helD 3131261..3133315 (-) 2055 WP_000420536.1 DNA helicase IV -
  L1P13_RS15660 yccF 3133438..3133884 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L1P13_RS15665 yccS 3133894..3136056 (+) 2163 WP_000875015.1 YccS family putative transporter -
  L1P13_RS15670 sxy/tfoX 3136019..3136648 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L1P13_RS15675 sulA 3136867..3137376 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L1P13_RS15680 ompA 3137733..3138785 (+) 1053 WP_000750419.1 porin OmpA -
  L1P13_RS15685 matP 3138860..3139312 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  L1P13_RS15690 ycbZ 3139498..3141258 (+) 1761 WP_000156526.1 AAA family ATPase -
  L1P13_RS15695 fabA 3141327..3141845 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  L1P13_RS15700 rmf 3141915..3142082 (-) 168 WP_000828648.1 ribosome modulation factor -
  L1P13_RS15705 pqiC 3142338..3142901 (-) 564 WP_000759120.1 membrane integrity-associated transporter subunit PqiC -
  L1P13_RS15710 pqiB 3142898..3144538 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  L1P13_RS15715 pqiA 3144543..3145796 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  L1P13_RS15720 uup 3145926..3147833 (-) 1908 WP_000053122.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=647234 L1P13_RS15670 WP_000839153.1 3136019..3136648(-) (sxy/tfoX) [Escherichia coli strain STEC379]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=647234 L1P13_RS15670 WP_000839153.1 3136019..3136648(-) (sxy/tfoX) [Escherichia coli strain STEC379]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1