Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHP34_RS37785 Genome accession   NZ_CP107861
Coordinates   8342521..8343549 (+) Length   342 a.a.
NCBI ID   WP_327664598.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00499     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8337521..8348549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP34_RS37770 (OHP34_37770) - 8339264..8340115 (-) 852 WP_327664595.1 carbohydrate ABC transporter permease -
  OHP34_RS37775 (OHP34_37775) - 8340112..8341077 (-) 966 WP_327664596.1 sugar ABC transporter permease -
  OHP34_RS37780 (OHP34_37780) - 8341074..8342381 (-) 1308 WP_327664597.1 extracellular solute-binding protein -
  OHP34_RS37785 (OHP34_37785) cytR 8342521..8343549 (+) 1029 WP_327664598.1 LacI family DNA-binding transcriptional regulator Regulator
  OHP34_RS37790 (OHP34_37790) - 8344346..8344837 (-) 492 WP_327664599.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHP34_RS37795 (OHP34_37795) - 8344957..8346444 (+) 1488 WP_327664600.1 MFS transporter -
  OHP34_RS37800 (OHP34_37800) - 8346595..8348235 (-) 1641 WP_327664601.1 AMP-binding protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37264.61 Da        Isoelectric Point: 6.5074

>NTDB_id=647217 OHP34_RS37785 WP_327664598.1 8342521..8343549(+) (cytR) [Streptomyces sp. NBC_00499]
MLQGMRDDEDLGRITLAEVAQKAGVSISTVSKVLNGRQDVAAPTRVKVERVLEAHSYRRTTRAAREAPLVELVFHELDSI
WAMELIRGVENVAKAHQASVVLTESGTRHAPAPDWIEGVMQRRPRGVVLVFSALPAEVKERLRSRSIPFVIVDPAGDPDP
DVPSVGSANWNGGRVATRHLVDLGHRRIGIITGPDDVLCSHARLDGYRSALSMAGIEGDRALVRYGDFHVEGGFEHALEL
LDLPEPPTAIFAGSDLQALGVLEAARVRGLRVPQDLSVVGYDDVPVARWSSPALTTVHQPLREMAEEAVQMIMRLRVQEP
VTTRLELATSLVVRKSTAPPAS

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=647217 OHP34_RS37785 WP_327664598.1 8342521..8343549(+) (cytR) [Streptomyces sp. NBC_00499]
ATGCTCCAAGGCATGCGTGATGACGAGGACTTGGGTCGCATCACCCTCGCCGAGGTGGCCCAAAAGGCAGGCGTCTCCAT
TTCGACAGTTTCGAAAGTGCTCAACGGGCGGCAGGACGTCGCCGCCCCGACGCGGGTCAAGGTGGAGCGGGTCCTGGAGG
CGCACTCCTACCGGCGCACGACGCGGGCCGCCCGCGAGGCGCCGCTCGTCGAGCTGGTCTTCCACGAGCTGGACAGCATC
TGGGCGATGGAGCTGATCCGCGGCGTGGAGAACGTCGCCAAGGCGCACCAGGCCAGCGTCGTGCTGACCGAGAGCGGGAC
GCGGCACGCGCCCGCCCCCGACTGGATCGAGGGCGTGATGCAGCGCAGGCCGCGCGGCGTCGTGCTCGTCTTCTCGGCGC
TGCCCGCCGAGGTCAAGGAGCGGCTGCGGTCGCGCTCCATCCCGTTCGTCATCGTCGACCCGGCGGGCGATCCCGACCCG
GACGTGCCCTCCGTCGGCTCGGCGAACTGGAACGGGGGGCGGGTCGCCACGCGGCACCTGGTGGACCTCGGGCATCGCCG
CATCGGGATCATCACGGGGCCCGACGACGTGCTCTGCTCGCACGCCCGCCTCGACGGCTACCGCTCCGCGCTCAGCATGG
CGGGCATCGAAGGCGACCGCGCCCTCGTCCGCTACGGCGACTTCCATGTCGAGGGCGGCTTCGAGCACGCCCTCGAACTC
CTCGACCTGCCCGAGCCGCCCACGGCGATCTTCGCCGGCAGCGACCTGCAGGCGCTCGGCGTCCTGGAGGCGGCCCGGGT
CCGCGGCCTGCGGGTGCCGCAGGACCTCTCGGTGGTCGGTTACGACGACGTCCCCGTGGCGCGCTGGTCGAGCCCGGCCC
TGACGACGGTCCACCAGCCGCTGCGGGAGATGGCCGAGGAGGCGGTGCAGATGATCATGCGGTTGCGCGTCCAGGAGCCG
GTGACCACACGCCTCGAACTGGCGACGAGCCTCGTCGTCCGCAAGAGCACGGCGCCGCCGGCTTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(15-58)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.538

97.368

0.366
  cytR Vibrio cholerae C6706

37.126

97.661

0.363