Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1O93_RS15085 Genome accession   NZ_CP091022
Coordinates   3053174..3053803 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain STEC276     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3048174..3058803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O93_RS15070 helD 3048416..3050470 (-) 2055 WP_001515148.1 DNA helicase IV -
  L1O93_RS15075 yccF 3050593..3051039 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L1O93_RS15080 yccS 3051049..3053211 (+) 2163 WP_000875061.1 YccS family putative transporter -
  L1O93_RS15085 sxy/tfoX 3053174..3053803 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L1O93_RS15090 sulA 3054022..3054531 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L1O93_RS15095 ompA 3054888..3055928 (+) 1041 WP_000750416.1 porin OmpA -
  L1O93_RS15100 matP 3056004..3056456 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L1O93_RS15105 ycbZ 3056642..3058402 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=647212 L1O93_RS15085 WP_000839153.1 3053174..3053803(-) (sxy/tfoX) [Escherichia coli strain STEC276]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=647212 L1O93_RS15085 WP_000839153.1 3053174..3053803(-) (sxy/tfoX) [Escherichia coli strain STEC276]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1