Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHP34_RS26245 Genome accession   NZ_CP107861
Coordinates   5750261..5751667 (-) Length   468 a.a.
NCBI ID   WP_266711289.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00499     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5745261..5756667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP34_RS26225 (OHP34_26225) - 5746526..5747209 (+) 684 WP_327662849.1 response regulator transcription factor -
  OHP34_RS26230 (OHP34_26230) - 5747288..5747953 (-) 666 WP_327662850.1 phosphatase PAP2 family protein -
  OHP34_RS26235 (OHP34_26235) - 5748140..5748967 (+) 828 WP_327662851.1 hypothetical protein -
  OHP34_RS26240 (OHP34_26240) disA 5749044..5750168 (-) 1125 WP_266711290.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHP34_RS26245 (OHP34_26245) radA/sms 5750261..5751667 (-) 1407 WP_266711289.1 DNA repair protein RadA Machinery gene
  OHP34_RS26250 (OHP34_26250) - 5751918..5753630 (+) 1713 WP_327662852.1 BACON domain-containing protein -
  OHP34_RS26255 (OHP34_26255) - 5753661..5754542 (-) 882 WP_327662853.1 hypothetical protein -
  OHP34_RS26260 (OHP34_26260) - 5754623..5755573 (+) 951 WP_327662854.1 Ppx/GppA phosphatase family protein -
  OHP34_RS26265 (OHP34_26265) - 5755842..5756666 (+) 825 WP_266711285.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49538.68 Da        Isoelectric Point: 8.2579

>NTDB_id=647192 OHP34_RS26245 WP_266711289.1 5750261..5751667(-) (radA/sms) [Streptomyces sp. NBC_00499]
MAARTKSKDRPSYRCTECGWQTAKWLGRCPECQAWGTIDEYGAPTVRTTAPGRVTTSALPIGQVDGKQATARTTGVPELD
RVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHKTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLSTVLG
HLDAVKPSLLILDSVQTIASGEIDGAPGGVSQVREVAGALIRASKERGMSTLLVGHVTKEGTIAGPRLLEHLVDVVLSFE
GDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQIP
SPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLTEPSADLAVALALASAASDTPLPKNLVAIGEVGLA
GEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVLEVADIGDALRVLPKGRRREAPREPEQRR

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=647192 OHP34_RS26245 WP_266711289.1 5750261..5751667(-) (radA/sms) [Streptomyces sp. NBC_00499]
ATGGCTGCCCGTACGAAATCCAAGGACCGTCCGTCCTACCGCTGCACGGAATGCGGCTGGCAGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGGCGTGGGGGACGATCGACGAGTACGGCGCGCCCACCGTGCGCACCACCGCACCGGGCCGCG
TCACCACCTCGGCGCTGCCCATCGGCCAGGTCGACGGGAAGCAGGCGACGGCCAGGACCACCGGCGTGCCCGAGCTCGAC
CGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCTGCT
GCTCGACGTGGCGGCCAAGGCGGCCAGTGACGAGCACAAGACCCTCTACGTGACGGGCGAGGAGTCGGCCTCCCAGGTCC
GCCTGCGCGCCGACCGGATCCACGCGATCGACGACCACCTGTACCTGGCCGCCGAGACCGATCTGTCCACCGTCCTCGGC
CACTTGGACGCGGTGAAGCCGTCGCTGCTCATCCTGGACTCCGTACAGACGATCGCGTCCGGGGAGATCGACGGGGCGCC
CGGTGGGGTGTCGCAGGTGCGCGAGGTCGCGGGCGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTCCTGG
TCGGCCACGTCACGAAGGAGGGCACGATCGCGGGCCCGCGCCTCCTGGAGCACCTGGTGGACGTCGTCCTCAGCTTCGAG
GGCGACCGGCACGCGCGCCTGCGCCTCGTACGCGGCGTCAAGAACCGCTACGGGACGACGGACGAGGTCGGCTGCTTCGA
GCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGCGCCGAGCCGGTGCCCGGCA
CCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCGGAGGTCCAGGCGCTCACCGTGGACTCCCAGATCCCC
TCGCCCCGCCGCACCACGTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTGCTCGAACAGCGCGGGAAGAT
CAGCGCGTTGGGCAAGAGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGCTGACCGAGCCCTCGGCCGACCTGGCCG
TGGCGCTCGCCCTCGCCTCCGCCGCGAGCGACACCCCGCTCCCCAAGAACCTTGTGGCGATCGGAGAAGTAGGCCTCGCG
GGCGAGGTCAGGCGGGTCACGGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACACACGCGCTCGTTCC
GTCCGATCCGGGAAAGGTCCCGGCCGGTATGAAGGTCCTGGAAGTCGCCGATATAGGGGACGCTCTGCGGGTGCTGCCGA
AGGGTCGTCGGCGAGAGGCCCCACGGGAGCCGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(368-428)

AAA domain (AAA_25)

(77-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.107

97.65

0.421
  radA Streptococcus pneumoniae D39

43.556

96.154

0.419
  radA Streptococcus pneumoniae R6

43.556

96.154

0.419
  radA Streptococcus pneumoniae Rx1

43.556

96.154

0.419
  radA Streptococcus mitis SK321

43.556

96.154

0.419
  radA Streptococcus mitis NCTC 12261

43.556

96.154

0.419
  radA Streptococcus pneumoniae TIGR4

43.556

96.154

0.419