Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHP34_RS18350 Genome accession   NZ_CP107861
Coordinates   4085933..4086544 (-) Length   203 a.a.
NCBI ID   WP_327661722.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00499     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4080933..4091544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP34_RS18330 (OHP34_18325) - 4082304..4083407 (-) 1104 WP_327661720.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OHP34_RS18335 (OHP34_18330) fdxA 4083547..4083867 (-) 321 WP_266713752.1 ferredoxin -
  OHP34_RS18340 (OHP34_18335) - 4084008..4085012 (+) 1005 WP_327661721.1 GNAT family N-acetyltransferase -
  OHP34_RS18345 (OHP34_18340) - 4085050..4085892 (+) 843 WP_266713748.1 transglutaminase-like domain-containing protein -
  OHP34_RS18350 (OHP34_18345) vraR 4085933..4086544 (-) 612 WP_327661722.1 response regulator transcription factor Regulator
  OHP34_RS18355 (OHP34_18350) - 4086541..4087614 (-) 1074 WP_327666134.1 sensor histidine kinase -
  OHP34_RS18360 (OHP34_18355) - 4087695..4088435 (-) 741 WP_327661723.1 ABC transporter permease -
  OHP34_RS18365 (OHP34_18360) - 4088432..4089340 (-) 909 WP_327661724.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21068.31 Da        Isoelectric Point: 4.6878

>NTDB_id=647170 OHP34_RS18350 WP_327661722.1 4085933..4086544(-) (vraR) [Streptomyces sp. NBC_00499]
MSTIKVLLAEDQSMVREALAALLGLEADIEVVAQVARGDEVVAAACAHAVDVALLDIEMPGCTGIEAAAQLREALPELKV
VVLTTFGRPGYLRSAMEAGAAAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGATN
AELAAALHLSQGTVRNYLSVAIQKLAVRNRAEAVAAAREKGWL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=647170 OHP34_RS18350 WP_327661722.1 4085933..4086544(-) (vraR) [Streptomyces sp. NBC_00499]
ATGAGCACGATCAAGGTGTTGTTGGCCGAGGACCAGTCGATGGTGCGCGAGGCGCTGGCCGCGCTGCTCGGCCTCGAGGC
GGACATCGAGGTCGTCGCGCAGGTGGCGCGCGGTGACGAGGTGGTGGCGGCCGCCTGCGCGCACGCGGTGGACGTGGCGC
TCCTCGACATCGAGATGCCGGGCTGCACGGGCATCGAGGCGGCGGCCCAACTCCGCGAGGCCCTGCCGGAGTTGAAGGTC
GTCGTGCTCACCACGTTCGGCCGGCCCGGCTATCTGCGCAGTGCCATGGAGGCGGGCGCGGCCGCGTTCCTGGTCAAGGA
CGCCCCGGCCGCGCAGCTCGCCGAGGCCGTACGGAAGGTGCTCGCGGGCGAACGTGTCATCGACCCGACGCTCGCGGCGG
CGGCCCTCGCGGAGGGCGCGAATCCGCTCACCGACCGCGAACGCGAGGTGTTGCGCGCGGCGGCGGACGGCGCCACCAAC
GCGGAACTGGCGGCCGCCCTCCACCTGTCCCAGGGCACGGTCCGCAACTACCTGTCGGTGGCGATCCAGAAGCTGGCGGT
GCGCAATCGGGCGGAGGCGGTGGCCGCCGCGCGGGAGAAGGGCTGGCTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(142-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.749

100

0.365