Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0U95_RS10155 Genome accession   NZ_CP091012
Coordinates   2196263..2197639 (-) Length   458 a.a.
NCBI ID   WP_006478470.1    Uniprot ID   B1JUG8
Organism   Burkholderia cenocepacia strain CMCC(B)23006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2191263..2202639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U95_RS10135 (L0U95_10135) cls 2191617..2193056 (+) 1440 WP_077179867.1 cardiolipin synthase -
  L0U95_RS10140 (L0U95_10140) - 2193108..2193587 (-) 480 WP_011549528.1 glutathione peroxidase -
  L0U95_RS10145 (L0U95_10145) - 2193723..2195654 (+) 1932 WP_077179866.1 ATP-binding cassette domain-containing protein -
  L0U95_RS10150 (L0U95_10150) - 2195847..2196113 (-) 267 WP_006488228.1 DUF2866 domain-containing protein -
  L0U95_RS10155 (L0U95_10155) radA 2196263..2197639 (-) 1377 WP_006478470.1 DNA repair protein RadA Machinery gene
  L0U95_RS10160 (L0U95_10160) alr 2197651..2198721 (-) 1071 WP_006478469.1 alanine racemase -
  L0U95_RS10165 (L0U95_10165) lplT 2198940..2200247 (+) 1308 WP_006478468.1 lysophospholipid transporter LplT -
  L0U95_RS10170 (L0U95_10170) thiD 2200306..2201115 (+) 810 WP_011549522.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0U95_RS10175 (L0U95_10175) - 2201134..2202099 (-) 966 WP_077179468.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48804.19 Da        Isoelectric Point: 6.9556

>NTDB_id=647127 L0U95_RS10155 WP_006478470.1 2196263..2197639(-) (radA) [Burkholderia cenocepacia strain CMCC(B)23006]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLADIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIANERRALYISGEESAAQIALRAQRLALLDGGAPAAELKLLAEIQLEKIQ
AAIDTERPDVAVIDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIAAFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVERLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=647127 L0U95_RS10155 WP_006478470.1 2196263..2197639(-) (radA) [Burkholderia cenocepacia strain CMCC(B)23006]
GTGGCCAAACAGAAAACCGTTTACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAGGGCCAATGCCCGTCGTG
CCAAGCCTGGAACACGCTCGTCGAATCGGTCGCCGAGTCGCCGGCCGCCCATCGGTTCCAGTCGCTCGCGAAGCGGGCGC
CGGTGCAGCGGCTCGCCGACATCGAGGCCGCCGACGTGCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTG
GGCGGTGGCCTGGTGCCCGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGATATCGCGAACGAGCGGCGCGCCCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGTTGCTCGACGGCGGCGCGCCGGCGGCCGAACTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGATACCGAGCGGCCGGACGTGGCCGTCATCGACTCGATCCAGACCGTCTATTCGGACGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGGCATGTGACGAAGGAGGGCAATCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGATACCGTGCTGTACTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTAGCCAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GTTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACGGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGCCACGCGGG
CATCGCGGCCTTCGATCAGGACGTGTTCCTCAATGCGGTGGGCGGGGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGCTGCCGAAAGGGCTGATCGTGTTCGGCGAGGTGGGGCTGGCA
GGCGAGATCCGGCCGTCCCCGCGCGGGCAGGAACGGCTGCGCGAAGCGGCGAAGCTCGGCTTCACGTCCGCGCTGATCCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAACGGCTCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1JUG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.241

100

0.496
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467