Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KB224_RS09140 Genome accession   NZ_CP091006
Coordinates   1931794..1932345 (-) Length   183 a.a.
NCBI ID   WP_115338917.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain R10C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1926794..1937345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB224_RS12510 - 1926889..1927014 (-) 126 WP_259959204.1 hypothetical protein -
  KB224_RS09090 (KB224_09090) - 1927014..1927367 (-) 354 WP_002474295.1 SA1788 family PVL leukocidin-associated protein -
  KB224_RS09095 (KB224_09095) - 1927386..1927742 (-) 357 WP_002474240.1 helix-turn-helix domain-containing protein -
  KB224_RS09100 (KB224_09100) - 1927743..1927928 (-) 186 WP_002474304.1 hypothetical protein -
  KB224_RS09105 (KB224_09105) - 1927925..1928335 (-) 411 WP_002503455.1 DUF1064 domain-containing protein -
  KB224_RS09110 (KB224_09110) - 1928345..1928590 (-) 246 WP_002503454.1 hypothetical protein -
  KB224_RS09115 (KB224_09115) - 1928590..1928751 (-) 162 WP_171769806.1 hypothetical protein -
  KB224_RS09120 (KB224_09120) - 1928745..1929515 (-) 771 WP_115338921.1 ATP-binding protein -
  KB224_RS09125 (KB224_09125) - 1929526..1930296 (-) 771 WP_002503452.1 conserved phage C-terminal domain-containing protein -
  KB224_RS09130 (KB224_09130) - 1930371..1931027 (+) 657 WP_145374047.1 hypothetical protein -
  KB224_RS09135 (KB224_09135) - 1931108..1931782 (-) 675 WP_145360460.1 putative HNHc nuclease -
  KB224_RS09140 (KB224_09140) ssbA 1931794..1932345 (-) 552 WP_115338917.1 single-stranded DNA-binding protein Machinery gene
  KB224_RS09145 (KB224_09145) - 1932348..1932971 (-) 624 WP_115338916.1 ERF family protein -
  KB224_RS09150 (KB224_09150) - 1932972..1933457 (-) 486 WP_115338915.1 siphovirus Gp157 family protein -
  KB224_RS09155 (KB224_09155) - 1933450..1933704 (-) 255 WP_115338914.1 hypothetical protein -
  KB224_RS09160 (KB224_09160) - 1933770..1933952 (-) 183 WP_032603798.1 hypothetical protein -
  KB224_RS09165 (KB224_09165) - 1933949..1934164 (-) 216 WP_002474300.1 hypothetical protein -
  KB224_RS09170 (KB224_09170) - 1934273..1934476 (+) 204 WP_002468183.1 hypothetical protein -
  KB224_RS09175 (KB224_09175) - 1934584..1935072 (-) 489 WP_002503445.1 ORF6C domain-containing protein -
  KB224_RS09180 (KB224_09180) - 1935324..1935545 (-) 222 WP_115338913.1 hypothetical protein -
  KB224_RS09185 (KB224_09185) - 1935764..1936102 (+) 339 WP_115338912.1 hypothetical protein -
  KB224_RS09190 (KB224_09190) - 1936088..1936321 (-) 234 WP_115338911.1 MW1434 family type I TA system toxin -
  KB224_RS09195 (KB224_09195) - 1936333..1937217 (-) 885 WP_115338910.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20810.48 Da        Isoelectric Point: 8.3348

>NTDB_id=647113 KB224_RS09140 WP_115338917.1 1931794..1932345(-) (ssbA) [Staphylococcus epidermidis strain R10C]
MINRVVLAGRLTKDPEFRQTASGVSVTTFSLAVNRTFKNKNGEREADFINVVVFRQQAENVNNYLSKGSLAGVDGRIQSR
SYDNNEGRRVFVTEVVADNIQFLDSGNKNNNQKGNYQQKNNNHQQNNGYQPNNNYQPPQQSNSYQPPQQNQNSYQQPQQQ
NQQQNPFANANGPLDIQDEDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=647113 KB224_RS09140 WP_115338917.1 1931794..1932345(-) (ssbA) [Staphylococcus epidermidis strain R10C]
ATGATAAACAGAGTAGTTTTAGCAGGTAGATTAACAAAAGATCCAGAGTTCAGACAAACAGCAAGCGGCGTAAGTGTAAC
CACATTTTCATTAGCAGTAAATAGAACATTCAAAAACAAAAATGGCGAAAGAGAAGCAGATTTTATTAATGTAGTTGTAT
TTAGACAACAAGCAGAAAACGTTAATAACTATCTTTCAAAAGGTAGTTTAGCTGGAGTAGATGGGCGTATTCAATCACGA
AGTTATGACAACAACGAAGGGCGACGTGTTTTTGTGACGGAAGTTGTAGCAGATAATATTCAATTCCTAGATAGTGGAAA
TAAAAACAACAATCAAAAAGGTAATTATCAACAGAAAAACAATAACCATCAACAAAATAATGGCTATCAACCCAATAATA
ATTACCAACCACCTCAACAAAGCAATAGCTATCAACCACCACAGCAAAATCAAAATAGTTACCAACAGCCACAACAACAG
AATCAACAACAAAATCCATTTGCTAACGCTAATGGTCCGTTAGATATTCAAGATGAGGATTTACCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.005

100

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

49.727

100

0.497