Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHQ36_RS36135 Genome accession   NZ_CP107860
Coordinates   8052046..8052735 (+) Length   229 a.a.
NCBI ID   WP_330307756.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8047046..8057735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS36120 (OHQ36_36130) - 8047710..8049833 (+) 2124 WP_330307753.1 DNA topoisomerase IV subunit B -
  OHQ36_RS36125 (OHQ36_36135) - 8050377..8050901 (+) 525 WP_330307754.1 DUF1453 domain-containing protein -
  OHQ36_RS36130 (OHQ36_36140) - 8050898..8052049 (+) 1152 WP_330307755.1 histidine kinase -
  OHQ36_RS36135 (OHQ36_36145) vraR 8052046..8052735 (+) 690 WP_330307756.1 response regulator transcription factor Regulator
  OHQ36_RS36140 (OHQ36_36150) - 8052840..8053328 (+) 489 WP_330307757.1 DUF485 domain-containing protein -
  OHQ36_RS36145 (OHQ36_36155) - 8053325..8054917 (+) 1593 WP_330307758.1 cation acetate symporter -
  OHQ36_RS36150 (OHQ36_36160) - 8054992..8055684 (-) 693 WP_327432232.1 response regulator -
  OHQ36_RS36155 (OHQ36_36165) - 8055847..8056662 (+) 816 WP_330307759.1 ABC transporter ATP-binding protein -
  OHQ36_RS36160 (OHQ36_36170) - 8056652..8057527 (+) 876 WP_330307760.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24337.92 Da        Isoelectric Point: 5.1620

>NTDB_id=647113 OHQ36_RS36135 WP_330307756.1 8052046..8052735(+) (vraR) [Streptomyces sp. NBC_00500]
MTQAEQAGRKPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGNEAVALVAELAPDVVLMDLRMPRCDGVEATRRIR
TAHPGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEPEPEPVLPPEV
PDGLTARETEVLLLIAEGLSNQEIARKLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLVRPPAG

Nucleotide


Download         Length: 690 bp        

>NTDB_id=647113 OHQ36_RS36135 WP_330307756.1 8052046..8052735(+) (vraR) [Streptomyces sp. NBC_00500]
ATGACGCAGGCGGAGCAGGCGGGCAGGAAGCCGGCGCGGGTCGTGGTGGCGGACGACCAGACCGTGGTGCGTGAGGGCAT
TGTGATGCTGCTGGGTCTGCTGCCCGGGATCGAGGTCGTCGGAGCGGCCGGGGACGGGAACGAGGCCGTGGCGCTTGTCG
CCGAACTCGCCCCGGACGTCGTGCTGATGGATCTGCGGATGCCCCGCTGTGACGGTGTCGAGGCGACCCGGCGCATCCGT
ACCGCGCACCCTGGGACGCAGGTCGTCGTGCTCACGACGTACGCGGACGACGAGTCGCTGTTTCCCGCGCTCAGAGCGGG
GGCTCGCGGCTATCTCACCAAGGACGCGGGAGGCGACGAGATCGTACGGGCGGTGGAGAGCGTGCTGTCCGGGGATGCGG
GGCTCTCGCCGAGCATCCAGCGGCGGCTGCTGGAGCGGCTGTCGGAGCCGGAACCCGAACCGGTCCTGCCTCCGGAGGTG
CCGGACGGGCTCACCGCGCGCGAGACCGAGGTGCTTCTGCTGATCGCGGAGGGGCTCAGCAACCAGGAGATCGCCCGCAA
GCTGCATGTCTCCACGGCCACCGTGAAGACCCACATCAACAACCTCTTCGCCAAGACCGGGCTGAAGGACCGTGCTCAAG
CGGTCCGTTACGCCTATGGGAAGGGTCTCGTACGGCCACCGGCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-218)

Response regulator receiver domain (Response_reg)

(14-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.437

93.013

0.367