Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHQ36_RS36010 Genome accession   NZ_CP107860
Coordinates   8018962..8019738 (-) Length   258 a.a.
NCBI ID   WP_189188217.1    Uniprot ID   A0A918D5P5
Organism   Streptomyces sp. NBC_00500     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8013962..8024738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS36000 (OHQ36_36010) - 8014282..8016261 (+) 1980 WP_406502131.1 IucA/IucC family protein -
  OHQ36_RS36005 (OHQ36_36015) - 8016350..8018326 (+) 1977 WP_330307734.1 ATP-dependent DNA helicase -
  OHQ36_RS36010 (OHQ36_36020) dinR/lexA 8018962..8019738 (-) 777 WP_189188217.1 transcriptional repressor LexA Regulator
  OHQ36_RS36015 (OHQ36_36025) nrdR 8020257..8020811 (+) 555 WP_330307735.1 transcriptional regulator NrdR -
  OHQ36_RS36020 (OHQ36_36030) - 8020962..8023865 (+) 2904 WP_330307736.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27977.71 Da        Isoelectric Point: 7.4755

>NTDB_id=647112 OHQ36_RS36010 WP_189188217.1 8018962..8019738(-) (dinR/lexA) [Streptomyces sp. NBC_00500]
MTTTADSATITAQDRSQGRLEPVHAMNEAVNHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=647112 OHQ36_RS36010 WP_189188217.1 8018962..8019738(-) (dinR/lexA) [Streptomyces sp. NBC_00500]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGTGAATCATGAGGGACCCAAGCGCTCCCTGCCAGGCCGACCTCCAGGCATCCGCGCGGACAGCTCGGGGCTCA
CAGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTACAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGGCAGGCGGTCGGCCTGTCCAGCACCTCCTCGGTCGCGCATCAGCTGATGGCATTGGAGCGCAAGGGCTTTCTGCGCCG
CGACCCGCACCGCCCGCGTGCGTACGAGGTCCGGGGCTCCGACCAGTCCTCGGTCCAGCCCACCGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTGCCGCTCGTCGGCCGTATCGCGGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGACGTC
TTCCCCCTCCCGCGCCAGCTGGTCGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGCGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCGATGCTGGACG
GCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGGCACGTGTGGCTGCTGCCGCACAACTCCGCGTACCAGCCGATT
CCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCAGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A918D5P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372