Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHQ36_RS16295 Genome accession   NZ_CP107860
Coordinates   3584452..3585120 (-) Length   222 a.a.
NCBI ID   WP_330304478.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3579452..3590120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS16275 (OHQ36_16265) - 3580259..3581242 (+) 984 WP_330304474.1 dihydrodipicolinate synthase family protein -
  OHQ36_RS16280 (OHQ36_16270) - 3581262..3582113 (-) 852 WP_406501626.1 class I SAM-dependent methyltransferase -
  OHQ36_RS16285 (OHQ36_16275) - 3582197..3582784 (+) 588 WP_330304476.1 TetR family transcriptional regulator -
  OHQ36_RS16290 (OHQ36_16280) - 3583110..3584327 (-) 1218 WP_330304477.1 sialidase family protein -
  OHQ36_RS16295 (OHQ36_16285) vraR 3584452..3585120 (-) 669 WP_330304478.1 response regulator transcription factor Regulator
  OHQ36_RS16300 (OHQ36_16290) - 3585117..3586409 (-) 1293 WP_330310092.1 sensor histidine kinase -
  OHQ36_RS16305 (OHQ36_16295) - 3586537..3588621 (-) 2085 WP_330304479.1 MMPL family transporter -
  OHQ36_RS16310 (OHQ36_16300) - 3588762..3589457 (-) 696 WP_330304480.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23263.88 Da        Isoelectric Point: 4.9253

>NTDB_id=647062 OHQ36_RS16295 WP_330304478.1 3584452..3585120(-) (vraR) [Streptomyces sp. NBC_00500]
MTIRVLLADDQTLVRAAFAMLVESARDMEVVGQAATGREAVELARSARADLVVMDIRMPDLDGIEATRLIAADQNLAGVR
VLVLTTYDTDEYIAEALRAGASGFLVKDTRPAELLDAIRTVAAGDALLSPGPTARLIARFLRGPAAPVPVAGGPDGLSER
EREVLALVARGLNNTEIAGALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVTPGAC

Nucleotide


Download         Length: 669 bp        

>NTDB_id=647062 OHQ36_RS16295 WP_330304478.1 3584452..3585120(-) (vraR) [Streptomyces sp. NBC_00500]
ATGACCATTCGCGTACTTCTCGCCGACGATCAGACGCTCGTGCGGGCCGCGTTCGCCATGCTCGTCGAGTCGGCGCGGGA
CATGGAGGTCGTCGGACAGGCGGCCACCGGGCGGGAGGCGGTGGAGCTGGCGCGCAGCGCGCGGGCCGATCTGGTCGTCA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCGACCCGGCTCATCGCGGCCGACCAGAACCTGGCCGGGGTCAGG
GTCCTGGTCCTCACCACGTACGACACCGATGAATACATCGCGGAGGCCCTGCGTGCGGGCGCCTCCGGCTTCCTGGTGAA
GGACACGAGGCCCGCCGAACTCCTCGACGCCATCCGCACGGTGGCCGCCGGGGACGCCCTGCTGTCACCGGGCCCGACCG
CCCGCCTGATCGCCCGCTTCCTGCGCGGCCCGGCGGCTCCCGTGCCCGTGGCGGGTGGCCCCGACGGCCTCTCCGAGCGG
GAGCGCGAGGTGCTGGCGCTGGTCGCGCGCGGCCTCAACAACACCGAGATAGCGGGGGCGCTGGGCCTGAGCCCGCTGAC
CGCGAAGACCCATGTCAGCCGCATCATGGGCAAGCTGGGCGCGCGGGACCGGGCTCAGCTGGTGATCGTGGCGTACGAGT
CGGGACTCGTCACTCCGGGGGCGTGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.327

97.748

0.365