Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHQ36_RS03155 Genome accession   NZ_CP107860
Coordinates   626968..627630 (-) Length   220 a.a.
NCBI ID   WP_330302191.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 621968..632630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS03130 (OHQ36_03110) - 622583..623608 (-) 1026 WP_330302186.1 Gfo/Idh/MocA family oxidoreductase -
  OHQ36_RS03135 (OHQ36_03115) - 623712..624494 (-) 783 WP_330302187.1 TIM barrel protein -
  OHQ36_RS03140 (OHQ36_03120) - 624690..625730 (+) 1041 WP_330302188.1 LacI family DNA-binding transcriptional regulator -
  OHQ36_RS03145 (OHQ36_03125) - 625850..626230 (+) 381 WP_330302189.1 DoxX family protein -
  OHQ36_RS03150 (OHQ36_03130) - 626227..626694 (+) 468 WP_330302190.1 peroxiredoxin -
  OHQ36_RS03155 (OHQ36_03135) vraR 626968..627630 (-) 663 WP_330302191.1 response regulator transcription factor Regulator
  OHQ36_RS03160 (OHQ36_03140) - 627627..628808 (-) 1182 WP_330302192.1 sensor histidine kinase -
  OHQ36_RS03165 (OHQ36_03145) - 628803..629078 (+) 276 WP_330302193.1 hypothetical protein -
  OHQ36_RS03170 (OHQ36_03150) - 629327..630178 (+) 852 WP_330302194.1 class I SAM-dependent methyltransferase -
  OHQ36_RS03175 (OHQ36_03155) - 630175..631122 (+) 948 WP_330302195.1 TauD/TfdA family dioxygenase -
  OHQ36_RS03180 (OHQ36_03160) - 631148..632614 (-) 1467 WP_330302196.1 FAD-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23188.50 Da        Isoelectric Point: 5.7214

>NTDB_id=647039 OHQ36_RS03155 WP_330302191.1 626968..627630(-) (vraR) [Streptomyces sp. NBC_00500]
MSPQESPAPIRLLLCDDHAMVRAGLRALLASTEGIEVVGEAGSGEEALAVAARVRPDVVLMDLQLGGGMDGVTATRHLSS
GDGDEPGVRGPRVLVLTMFDTDADISRAIEAGATGYLLKAERPEELFAAIHSAASGRTALSAPVADRVLAQLRSPRPALS
DRERDILEQLARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 663 bp        

>NTDB_id=647039 OHQ36_RS03155 WP_330302191.1 626968..627630(-) (vraR) [Streptomyces sp. NBC_00500]
GTGAGCCCCCAGGAATCCCCCGCGCCGATCCGGCTGCTGCTGTGCGACGACCATGCCATGGTGCGTGCCGGGCTGCGCGC
GCTGCTGGCCAGTACCGAGGGTATCGAGGTGGTCGGCGAGGCGGGCAGCGGAGAGGAGGCTCTCGCCGTGGCCGCCCGCG
TCCGGCCCGACGTCGTCCTGATGGACCTTCAGCTCGGCGGCGGCATGGACGGCGTGACGGCCACCCGGCACCTGTCGTCG
GGCGACGGCGACGAACCCGGCGTGCGGGGACCCCGCGTGCTGGTGCTCACGATGTTCGACACCGACGCCGACATCTCCCG
GGCCATCGAGGCCGGCGCCACCGGTTATCTGCTCAAGGCCGAGCGCCCGGAAGAGCTCTTCGCGGCGATCCACAGCGCGG
CATCCGGCCGGACCGCCCTGTCGGCCCCGGTCGCCGACCGGGTGCTGGCCCAGCTGCGCAGCCCACGTCCCGCCCTGTCC
GACCGCGAGCGCGACATCCTTGAGCAGCTGGCGCGCGGCCTGGGCAACCGGGAGATCGCCCGGGCCCTGTTCATCAGCGA
GGCCACGGTCAAGACCCACCTGGGCCGGATCTACGCCAAGCTCGGGGTGGACACCCGAGCGGGCGCGGTGTCCGTCGCCA
AGGAGCAGCGACTCCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(13-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.383

97.273

0.364