Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG490_RS27510 Genome accession   NZ_CP107855
Coordinates   5948863..5949654 (-) Length   263 a.a.
NCBI ID   WP_328301175.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5943863..5954654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS27495 (OG490_27475) - 5943948..5944604 (+) 657 WP_330298939.1 GNAT family N-acetyltransferase -
  OG490_RS27500 (OG490_27480) - 5944727..5946691 (+) 1965 WP_330298940.1 IucA/IucC family siderophore biosynthesis protein -
  OG490_RS27505 (OG490_27485) - 5946744..5948714 (+) 1971 WP_330298941.1 ATP-dependent DNA helicase -
  OG490_RS27510 (OG490_27490) dinR/lexA 5948863..5949654 (-) 792 WP_328301175.1 transcriptional repressor LexA Regulator
  OG490_RS27515 (OG490_27495) nrdR 5950143..5950655 (+) 513 WP_330298942.1 transcriptional regulator NrdR -
  OG490_RS27520 (OG490_27500) - 5950804..5953701 (+) 2898 WP_330298943.1 vitamin B12-dependent ribonucleotide reductase -
  OG490_RS27525 (OG490_27505) - 5953710..5954162 (-) 453 WP_330298944.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28480.25 Da        Isoelectric Point: 7.3866

>NTDB_id=647017 OG490_RS27510 WP_328301175.1 5948863..5949654(-) (dinR/lexA) [Streptomyces sp. NBC_00503]
MTTTADSATITAQNRSQSRLEPVHAMNDASLNPEAEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFCLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=647017 OG490_RS27510 WP_328301175.1 5948863..5949654(-) (dinR/lexA) [Streptomyces sp. NBC_00503]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCATGAA
CGACGCAAGCCTGAACCCGGAGGCGGAGCCCGCACGCCCCGCACGCTCGCTGCCAGGGCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATCCGCGACTCGGTGCAGCGGCGGGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCCGTCGGCCTGTCCAGCACGTCGTCGGTCGCACACCAGCTCATGGCCCTGGAGCGCAA
GGGTTTCCTGCGCCGTGACCCGCACCGCCCCCGGGCGTACGAGGTACGCGGCTCCGACCAGCCCAGCTCGCAGCCCACGG
ACACCACCGGCAAGCCCGCGGCCTCGTACGTCCCGCTGGTCGGCCGGATCGCGGCGGGTGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCGCTCCCGCGCCAGCTGGTGGGCGACGGTGAACTGTTCTGCCTCAAGGTCGTCGGAGACTC
GATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTCCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCCATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCG
GCCTACCAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCCGTACTGCGCAGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376