Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG490_RS26635 Genome accession   NZ_CP107855
Coordinates   5732347..5733564 (+) Length   405 a.a.
NCBI ID   WP_330298790.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5727347..5738564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS26620 (OG490_26600) - 5728028..5729464 (+) 1437 WP_330298787.1 sugar porter family MFS transporter -
  OG490_RS26625 (OG490_26605) - 5729489..5730475 (-) 987 WP_330298788.1 LLM class flavin-dependent oxidoreductase -
  OG490_RS26630 (OG490_26610) - 5730539..5732020 (-) 1482 WP_330298789.1 cytosine permease -
  OG490_RS26635 (OG490_26615) pilA 5732347..5733564 (+) 1218 WP_330298790.1 signal recognition particle-docking protein FtsY Machinery gene
  OG490_RS26640 (OG490_26620) - 5733669..5734340 (-) 672 WP_330298791.1 bifunctional DNA primase/polymerase -
  OG490_RS26645 (OG490_26625) - 5734748..5736292 (+) 1545 WP_330298792.1 hypothetical protein -
  OG490_RS26650 (OG490_26630) - 5736680..5738023 (+) 1344 WP_330298793.1 ammonium transporter -
  OG490_RS26655 (OG490_26635) - 5738020..5738358 (+) 339 WP_330298794.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42313.47 Da        Isoelectric Point: 4.4238

>NTDB_id=647013 OG490_RS26635 WP_330298790.1 5732347..5733564(+) (pilA) [Streptomyces sp. NBC_00503]
MEILILVVVIALVAVGAISGLVVSSRKKKQLPTAPSSTPTITAPPAEPQVGEDAAPTAEEPRRTIEEVALPEAAAEAPVA
EPEAPVAEVPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVAPTQELVDR
LRERVKVLGTRTPADLRALLKEELVALLGTDFDRAVKTESGVDTPAVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGDRVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=647013 OG490_RS26635 WP_330298790.1 5732347..5733564(+) (pilA) [Streptomyces sp. NBC_00503]
ATGGAAATCCTCATCCTTGTCGTAGTCATCGCCCTGGTCGCGGTCGGTGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCACGGCACCGTCGAGCACGCCGACCATCACTGCCCCGCCCGCCGAACCGCAGGTGGGGGAGGACG
CCGCACCGACGGCGGAAGAACCGCGCCGCACGATCGAGGAGGTCGCGCTCCCCGAGGCCGCGGCCGAGGCCCCGGTCGCG
GAGCCCGAAGCCCCCGTCGCCGAGGTGCCCGCCGCCCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGTCCG
GCTGCGCGCGCGCCTCGCCCGGTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCCCGCGAGCACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTCATCGCCGACGTCGGTGTCGCCCCGACCCAGGAGCTGGTGGACCGG
CTCCGCGAGCGGGTCAAGGTGCTCGGTACCCGCACCCCCGCCGATCTGCGCGCCCTGCTGAAGGAAGAGCTCGTCGCCCT
CCTCGGCACCGACTTCGACCGCGCCGTGAAGACCGAGAGCGGCGTGGACACCCCCGCCGTCATCATGGTCGTCGGCGTGA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTCGCCCGCGTGCTCGTCGCCGACGGGCGCAGCGTCGTGCTCGGCGCG
GCCGACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGACCGGGTCGGCGCGCGCACCGTCCGTGGACC
CGAGGGCGGCGACCCGGCCTCCATCGCGTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCG
ACACCGCCGGCCGCCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGC
CCGCTGGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGCCAGAACGGCCTGACCCAGGCCCGGGTCTTCGCGGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGC
TGGGCGTCCCGGTCAAGCTCGTCGGCCTCGGCGAGGGCGCGGACGACCTGGCCCCCTTCGAGCCGGAGGCCTTCGTCGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(205-403)

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.204

91.852

0.388