Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | KB232_RS06130 | Genome accession | NZ_CP090989 |
| Coordinates | 1285802..1286776 (+) | Length | 324 a.a. |
| NCBI ID | WP_001831109.1 | Uniprot ID | A0A9Q5JKD6 |
| Organism | Staphylococcus epidermidis strain 52B | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1280802..1291776
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KB232_RS06095 (KB232_06095) | rpmG | 1281282..1281431 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| KB232_RS06100 (KB232_06100) | - | 1281614..1282165 (+) | 552 | WP_001831001.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| KB232_RS06105 (KB232_06105) | - | 1282166..1283626 (+) | 1461 | WP_001832757.1 | rhomboid family protein | - |
| KB232_RS06110 (KB232_06110) | - | 1283610..1283810 (+) | 201 | WP_001831138.1 | YqgQ family protein | - |
| KB232_RS06115 (KB232_06115) | - | 1283810..1284796 (+) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| KB232_RS06120 (KB232_06120) | - | 1284796..1285122 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| KB232_RS06125 (KB232_06125) | - | 1285122..1285745 (+) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| KB232_RS06130 (KB232_06130) | comGA | 1285802..1286776 (+) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| KB232_RS06135 (KB232_06135) | comGB | 1286748..1287815 (+) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| KB232_RS06140 (KB232_06140) | comGC | 1287833..1288150 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| KB232_RS06145 (KB232_06145) | comGD | 1288140..1288577 (+) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| KB232_RS06150 (KB232_06150) | - | 1288564..1288857 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| KB232_RS06155 (KB232_06155) | - | 1288781..1289272 (+) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| KB232_RS06160 (KB232_06160) | - | 1289437..1289949 (+) | 513 | WP_002485736.1 | shikimate kinase | - |
| KB232_RS06165 (KB232_06165) | gcvT | 1290167..1291258 (+) | 1092 | WP_049392313.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37330.44 Da Isoelectric Point: 8.8174
>NTDB_id=646999 KB232_RS06130 WP_001831109.1 1285802..1286776(+) (comGA) [Staphylococcus epidermidis strain 52B]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=646999 KB232_RS06130 WP_001831109.1 1285802..1286776(+) (comGA) [Staphylococcus epidermidis strain 52B]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.062 |
100 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.062 |
100 |
0.701 |