Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   KB232_RS01490 Genome accession   NZ_CP090989
Coordinates   348946..349842 (+) Length   298 a.a.
NCBI ID   WP_002468753.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 52B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 343946..354842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB232_RS01470 (KB232_01470) - 344632..346176 (+) 1545 WP_049392296.1 NAD(P)H-binding protein -
  KB232_RS01475 (KB232_01475) - 346299..347768 (-) 1470 WP_002456720.1 alkaline phosphatase -
  KB232_RS01480 (KB232_01480) - 348065..348244 (+) 180 WP_002456719.1 hypothetical protein -
  KB232_RS01485 (KB232_01485) braR 348275..348940 (+) 666 WP_001830679.1 response regulator transcription factor Regulator
  KB232_RS01490 (KB232_01490) braS 348946..349842 (+) 897 WP_002468753.1 sensor histidine kinase Regulator
  KB232_RS01495 (KB232_01495) - 349953..350702 (+) 750 WP_049392297.1 ABC transporter ATP-binding protein -
  KB232_RS01500 (KB232_01500) - 350704..352716 (+) 2013 WP_049392300.1 ABC transporter permease -
  KB232_RS01505 (KB232_01505) - 352820..353410 (+) 591 WP_049392302.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34874.50 Da        Isoelectric Point: 6.7743

>NTDB_id=646984 KB232_RS01490 WP_002468753.1 348946..349842(+) (braS) [Staphylococcus epidermidis strain 52B]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDAQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=646984 KB232_RS01490 WP_002468753.1 348946..349842(+) (braS) [Staphylococcus epidermidis strain 52B]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTGTTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAATGAACATCTTAAAGATAAAGTAGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGTCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
TATTTTAACCGATGCACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATTTGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTCTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597