Detailed information NTG0646980

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG490_RS15350
• Genome accession: NZ_CP107855
• Coordinates: 3317620..3318597 (-)
• Length: 325 a.a.
• NCBI ID: WP_330296847.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00503
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3312620..3323597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG490_RS15330 (OG490_15305)	pfkB	3312988..3313941 (-)	954	WP_330296843.1	1-phosphofructokinase	-
OG490_RS15335 (OG490_15310)	-	3313938..3314699 (-)	762	WP_330296844.1	DeoR/GlpR family DNA-binding transcription regulator	-
OG490_RS15340 (OG490_15315)	-	3314834..3316408 (-)	1575	WP_330296845.1	MFS transporter	-
OG490_RS15345 (OG490_15320)	-	3316472..3317503 (+)	1032	WP_330296846.1	transcriptional regulator	-
OG490_RS15350 (OG490_15325)	rpoS	3317620..3318597 (-)	978	WP_330296847.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG490_RS15355 (OG490_15330)	-	3319149..3319796 (+)	648	WP_330296848.1	Uma2 family endonuclease	-
OG490_RS15360 (OG490_15335)	-	3319768..3320175 (-)	408	WP_330296849.1	hypothetical protein	-
OG490_RS15365 (OG490_15340)	-	3320168..3320989 (-)	822	WP_330296850.1	class III extradiol ring-cleavage dioxygenase	-
OG490_RS15370 (OG490_15345)	-	3321111..3322649 (-)	1539	WP_330296851.1	MFS transporter	-
OG490_RS15375 (OG490_15350)	-	3322725..3323510 (-)	786	WP_330296852.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 36454.23 Da
• Isoelectric Point: 5.1312

>NTDB_id=646980 OG490_RS15350 WP_330296847.1 3317620..3318597(-) (rpoS) [Streptomyces sp. NBC_00503]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERKGGTPSQEELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNREKGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDEDGDTQFGDLLEDT
SAISPEQSVMSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide

• Length: 978 bp

>NTDB_id=646980 OG490_RS15350 WP_330296847.1 3317620..3318597(-) (rpoS) [Streptomyces sp. NBC_00503]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCTCGCGCAGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTCGACGAGATCGCGCGTACCCCGCTGCTCGACGCAGCCAAGGAAGTCGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGGGCGATAGAGCGCAAGGGCGGTACGCCCTCCCAGGAGGAGCTGGAA
GCACTGGCCGCCGAAGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCCAACCTCCGCCTGGTCGTCGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGGTGCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACATACGCCACCTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACTTGGTGGAGGAGCTCGGCCGGATCCGCCGGGTCCAGCGCGAGTTCAACCGCGA
GAAGGGCCGGGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTGGGCGACGTCCTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCGGTCGACGAGGACGGCGACACGCAGTTCGGCGACCTGCTCGAGGACACC
TCGGCCATCTCTCCGGAGCAGTCGGTCATGTCCTTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGGAAGCTGGACCA
GCGAACCGCGTCGATCATCAAGATGCGTTACGGCATAGATGACGGTCGGGAGCGTACGCTGACGGAAGTGGGCAAGCAGC
ACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAGCGGATGGCGCGCGACACCGGC
TTCGACGCGGTGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (26-59)

• Sigma-70, region 4 (Sigma70_r4) (261-313)

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 region 3 (Sigma70_r3) (172-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.667	92.308	0.366