Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG490_RS12075 Genome accession   NZ_CP107855
Coordinates   2574907..2576886 (+) Length   659 a.a.
NCBI ID   WP_330296283.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2569907..2581886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS12040 (OG490_12025) - 2570137..2570499 (-) 363 WP_330296279.1 hypothetical protein -
  OG490_RS12060 (OG490_12045) - 2571144..2571452 (+) 309 WP_330296280.1 YtxH domain-containing protein -
  OG490_RS12065 (OG490_12050) - 2571559..2572998 (+) 1440 WP_330296281.1 FGGY family carbohydrate kinase -
  OG490_RS12070 (OG490_12055) rcrP 2573177..2574910 (+) 1734 WP_330296282.1 ABC transporter ATP-binding protein Regulator
  OG490_RS12075 (OG490_12060) rcrQ 2574907..2576886 (+) 1980 WP_330296283.1 ABC transporter ATP-binding protein Regulator
  OG490_RS12080 (OG490_12065) - 2576962..2578065 (-) 1104 WP_330296284.1 RNA polymerase sigma factor -
  OG490_RS12085 (OG490_12070) - 2578241..2578825 (+) 585 WP_330296285.1 hypothetical protein -
  OG490_RS12090 (OG490_12075) - 2578822..2579910 (+) 1089 WP_330296286.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 70426.11 Da        Isoelectric Point: 6.1489

>NTDB_id=646971 OG490_RS12075 WP_330296283.1 2574907..2576886(+) (rcrQ) [Streptomyces sp. NBC_00503]
MSGPGGRMMMGPPTTRSMDFKGSGKRLLRELARDRAKLFGMVVAVICSVAASVTGPKILGKATDLVFAGIVGKNLDPRLT
KEQALEGMRAHGNGGMADMLSGTDFTPGKGVDFGAVGAVALWALAVFTLAGLLMLVATRLSNHIQNGTVYRMREDLQAKL
SRLPLSYFDKQKRGEVLSRATNDIDNIGQTLQQTMGQLMNSLLTIVGVLAMMFWISPVLALVALVTIPVSGYVAAKIGKK
SQPQFVAQWKSTGALNAHVEEMYSGHTLVKVFGRQKESAALFAEQNEELYKASFKAQLVTGIMQPVMMFISNINYVLVAV
VGGLKVASGTLSIGDVQAFIQYSRQFSMPLSQVASMANLVQSGVASAERVYELLDAEEQDPDVEVPERPETVRGQVTFDK
VAFRYELDKPLIEDLSLTVDPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMTREELRSGIGMVLQDTW
LFGGTIAQNIAYGAGVGGGARSALGQGGGGRRAGEVTRAEIEEAARAAHADRFVRTLPEGYDTVLDDEGAGVSAGEKQLI
TIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMARLAAGRTSFVIAHRLSTIRDADLILVMESGSIVEQGTHEELLGSD
GAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=646971 OG490_RS12075 WP_330296283.1 2574907..2576886(+) (rcrQ) [Streptomyces sp. NBC_00503]
ATGAGCGGGCCCGGAGGACGAATGATGATGGGACCGCCGACGACGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCT
GCTGCGCGAGCTGGCCCGCGACCGGGCCAAGCTCTTCGGCATGGTCGTCGCGGTCATCTGCTCCGTCGCCGCTTCGGTGA
CCGGTCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCCGGGATCGTCGGCAAGAACCTGGATCCGCGGCTCACC
AAGGAACAGGCCCTGGAGGGGATGCGCGCCCACGGCAACGGCGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCC
GGGCAAGGGCGTGGACTTCGGCGCGGTCGGGGCGGTGGCGCTGTGGGCGCTGGCCGTCTTCACGCTCGCCGGTCTGCTGA
TGCTGGTCGCGACACGGCTGTCCAACCACATCCAGAACGGCACCGTGTACCGGATGCGCGAGGACCTCCAGGCGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACAAGCAGAAGCGCGGCGAGGTGCTCAGCCGGGCCACGAACGACATCGACAACAT
CGGGCAGACGCTCCAGCAGACGATGGGGCAGCTGATGAACTCGCTGCTCACCATCGTCGGCGTGCTGGCGATGATGTTCT
GGATCTCCCCGGTGCTGGCGCTGGTCGCCCTGGTGACCATTCCGGTCTCCGGGTACGTGGCCGCGAAGATCGGCAAGAAG
TCCCAGCCGCAGTTCGTGGCGCAGTGGAAGTCCACGGGCGCGCTCAACGCGCACGTGGAGGAGATGTACTCGGGCCACAC
CCTGGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCCTCTTCGCCGAGCAGAACGAGGAGCTGTACAAGGCCTCGT
TCAAGGCGCAGCTGGTCACCGGGATCATGCAGCCCGTGATGATGTTCATCTCGAACATCAACTACGTGCTCGTCGCGGTC
GTCGGCGGTCTGAAGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTTCTC
GATGCCGCTGAGCCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGCGTCGCCTCGGCGGAGCGGGTCTACGAGCTGC
TCGACGCGGAGGAGCAGGACCCGGACGTCGAGGTTCCGGAGCGCCCCGAGACCGTGCGCGGACAGGTCACCTTCGACAAG
GTCGCCTTCCGCTACGAGCTGGACAAGCCGCTGATCGAGGACCTCTCGCTCACGGTCGACCCCGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAACCTCCTGATGCGGTTCTACGAGGTCACGGGCGGCCGGATCG
CCCTCGACGGCGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCAGCGGCATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACCATCGCGCAGAACATCGCCTACGGAGCCGGAGTAGGAGGGGGTGCGCGAAGCGCACTCGGTCAGGG
TGGCGGCGGGCGACGGGCGGGCGAGGTGACGCGCGCCGAGATCGAGGAGGCCGCGCGGGCGGCGCACGCCGACCGGTTCG
TCCGTACCCTGCCCGAGGGCTACGACACGGTGCTGGACGACGAGGGCGCGGGCGTCAGCGCGGGCGAGAAGCAGCTGATC
ACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCGACGAGCTCGGTGGACACCCGTACCGA
GGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGGCCGGCCGCACCTCCTTCGTGATCGCGCACCGGCTGTCCACGATCC
GCGACGCCGACCTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGCACGAGGAGCTGCTGGGCTCGGAC
GGCGCGTACGCACGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-580)

ABC transporter transmembrane region (ABC_membrane)

(41-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.474

98.027

0.387