Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG490_RS12070 Genome accession   NZ_CP107855
Coordinates   2573177..2574910 (+) Length   577 a.a.
NCBI ID   WP_330296282.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2568177..2579910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS12035 (OG490_12020) - 2568920..2570074 (+) 1155 WP_330296278.1 glutamate--cysteine ligase -
  OG490_RS12040 (OG490_12025) - 2570137..2570499 (-) 363 WP_330296279.1 hypothetical protein -
  OG490_RS12060 (OG490_12045) - 2571144..2571452 (+) 309 WP_330296280.1 YtxH domain-containing protein -
  OG490_RS12065 (OG490_12050) - 2571559..2572998 (+) 1440 WP_330296281.1 FGGY family carbohydrate kinase -
  OG490_RS12070 (OG490_12055) rcrP 2573177..2574910 (+) 1734 WP_330296282.1 ABC transporter ATP-binding protein Regulator
  OG490_RS12075 (OG490_12060) rcrQ 2574907..2576886 (+) 1980 WP_330296283.1 ABC transporter ATP-binding protein Regulator
  OG490_RS12080 (OG490_12065) - 2576962..2578065 (-) 1104 WP_330296284.1 RNA polymerase sigma factor -
  OG490_RS12085 (OG490_12070) - 2578241..2578825 (+) 585 WP_330296285.1 hypothetical protein -
  OG490_RS12090 (OG490_12075) - 2578822..2579910 (+) 1089 WP_330296286.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62380.40 Da        Isoelectric Point: 5.3934

>NTDB_id=646970 OG490_RS12070 WP_330296282.1 2573177..2574910(+) (rcrP) [Streptomyces sp. NBC_00503]
MLIRLLRTHLGPYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVHGDTGYILRSGALMLGVSLVQLVCNCGAVYFGA
RTAAAFGRDLRAGVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIFMALSLDVKLSGV
LLAVVPVLGLSVGAIVLKTRPLFRTMQTRLDTVNRVLREQITGNRVIRAFIRDDYEKDRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERVQEVLDTDSSVVP
PTDPVRKLLSHGRLELRGADFRYPGAESPVLRGVDLLASPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLAKTVGMVPQKPYLFSGTVATNLRYGRPDATDEELWHALEVAQAKGFVSELEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=646970 OG490_RS12070 WP_330296282.1 2573177..2574910(+) (rcrP) [Streptomyces sp. NBC_00503]
GTGCTCATACGACTTCTGCGGACCCACCTCGGTCCGTACCGGAAACCGATCGCCGTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCGAGCCTCTACCTGCCCACGCTCAACGCCGACATCATTGACAACGGTGTCGTCCACGGCGACACCGGCTACA
TCCTGCGCTCCGGCGCCCTGATGCTCGGCGTCTCGCTCGTGCAGCTCGTCTGCAACTGCGGCGCCGTCTACTTCGGCGCC
CGCACCGCCGCCGCCTTCGGCCGCGATCTGCGGGCCGGCGTCTTCGACCGCGTGCAGAGCTTCTCCGCACGCGAGCTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGCACGACCAATGACGTGCAGCAGATCCAGATGCTCGTCCTGATGACCTTCA
CGCTGATGGTCTCGGCTCCGATCATGTGCGTCGGCGGCATCTTCATGGCGCTCTCCCTCGACGTGAAGCTGTCGGGCGTC
CTGCTCGCCGTCGTCCCCGTCCTGGGCCTGTCGGTCGGCGCGATCGTCCTGAAGACGCGGCCGCTGTTCCGCACGATGCA
GACGCGCCTGGACACCGTGAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCATCCGCGACG
ACTACGAGAAGGACCGCTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCGCTGGCGGCCGGCAAGCTGCTCGCGCTG
ATGTTCCCGACCGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTGGCCTACCTGATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCGACTCCAGCGTGGTCCCG
CCCACCGACCCGGTCCGCAAGCTGCTGAGCCACGGCCGCCTCGAACTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GTCCCCCGTCCTGCGCGGGGTCGACCTGCTGGCCAGCCCCGGCGAGACCACCGCCGTGATCGGCTCCACGGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGGTCCCCCGGCTGTTCGACGCGACCGGCGGCGAGGTCCTCGTCGACGGCGAGGACGTACGC
CGCCTCGACCCGGAACTGCTGGCCAAGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCCAC
CAACCTGCGCTACGGGCGCCCCGACGCCACCGACGAAGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCTCCGAGCTGGAGGGCGGGCTCGACGCGCCCATCGCCCAGGGCGGAACCAATGTCTCCGGTGGCCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTCGTACAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCCGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGGCAGGTCGTGGGCGAGGGACGCCATCACGAGCTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.026

94.627

0.388