Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   KB226_RS05725 Genome accession   NZ_CP090985
Coordinates   1195873..1196928 (-) Length   351 a.a.
NCBI ID   WP_235075624.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 50D     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190873..1201928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB226_RS05690 (KB226_05690) gcvPA 1191052..1192398 (-) 1347 WP_002456181.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KB226_RS05695 (KB226_05695) gcvT 1192418..1193509 (-) 1092 WP_001831107.1 glycine cleavage system aminomethyltransferase GcvT -
  KB226_RS05700 (KB226_05700) - 1193727..1194239 (-) 513 WP_002485736.1 shikimate kinase -
  KB226_RS05705 (KB226_05705) - 1194404..1194895 (-) 492 WP_002440043.1 competence type IV pilus minor pilin ComGF -
  KB226_RS05710 (KB226_05710) - 1194819..1195112 (-) 294 WP_001831116.1 hypothetical protein -
  KB226_RS05715 (KB226_05715) comGD 1195099..1195536 (-) 438 WP_001831025.1 competence type IV pilus minor pilin ComGD -
  KB226_RS05720 (KB226_05720) comGC 1195526..1195843 (-) 318 WP_001831271.1 competence type IV pilus major pilin ComGC Machinery gene
  KB226_RS05725 (KB226_05725) comGB 1195873..1196928 (-) 1056 WP_235075624.1 competence type IV pilus assembly protein ComGB Machinery gene
  KB226_RS05730 (KB226_05730) comGA 1196900..1197874 (-) 975 WP_001831109.1 competence type IV pilus ATPase ComGA Machinery gene
  KB226_RS05735 (KB226_05735) - 1197931..1198554 (-) 624 WP_001831016.1 MBL fold metallo-hydrolase -
  KB226_RS05740 (KB226_05740) - 1198554..1198880 (-) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  KB226_RS05745 (KB226_05745) - 1198880..1199866 (-) 987 WP_001831113.1 ROK family glucokinase -
  KB226_RS05750 (KB226_05750) - 1199866..1200066 (-) 201 WP_001831138.1 YqgQ family protein -
  KB226_RS05755 (KB226_05755) - 1200050..1201510 (-) 1461 WP_001832757.1 rhomboid family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 41909.11 Da        Isoelectric Point: 10.1395

>NTDB_id=646961 KB226_RS05725 WP_235075624.1 1195873..1196928(-) (comGB) [Staphylococcus epidermidis strain 50D]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVRIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELM

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=646961 KB226_RS05725 WP_235075624.1 1195873..1196928(-) (comGB) [Staphylococcus epidermidis strain 50D]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AGCGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGATAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGCAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCGTATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.432

100

0.496
  comGB Staphylococcus aureus N315

49.432

100

0.496