Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA84_RS26390 Genome accession   NZ_CP107845
Coordinates   5711233..5712024 (-) Length   263 a.a.
NCBI ID   WP_053685155.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5706233..5717024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS26375 (OHA84_26310) - 5706468..5707151 (+) 684 WP_266969505.1 GNAT family N-acetyltransferase -
  OHA84_RS26380 (OHA84_26315) - 5707245..5709101 (+) 1857 WP_266969503.1 IucA/IucC family siderophore biosynthesis protein -
  OHA84_RS26385 (OHA84_26320) - 5709154..5711124 (+) 1971 WP_266969501.1 ATP-dependent DNA helicase -
  OHA84_RS26390 (OHA84_26325) dinR/lexA 5711233..5712024 (-) 792 WP_053685155.1 transcriptional repressor LexA Regulator
  OHA84_RS26395 (OHA84_26330) nrdR 5712499..5713014 (+) 516 WP_053685157.1 transcriptional regulator NrdR -
  OHA84_RS26400 (OHA84_26335) - 5713171..5716059 (+) 2889 WP_266969498.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28539.27 Da        Isoelectric Point: 7.4240

>NTDB_id=646931 OHA84_RS26390 WP_053685155.1 5711233..5712024(-) (dinR/lexA) [Streptomyces sp. NBC_00513]
MTTTADSATITAQNRSQSRLEPVHAMNDASQNPETEPARPARSMPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=646931 OHA84_RS26390 WP_053685155.1 5711233..5712024(-) (dinR/lexA) [Streptomyces sp. NBC_00513]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCATGAA
TGACGCAAGTCAGAATCCGGAGACGGAGCCCGCACGCCCCGCTCGCTCGATGCCGGGGCGACCTCCAGGCATCCGCGCCG
ACAGTTCCGGACTCACGGATCGGCAGCGGAGGGTCATCGAGGTCATCCGCGACTCCGTGCAGCGCAGGGGGTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTGGGACTGTCCAGCACCTCGTCGGTCGCGCACCAGCTGATGGCGCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGTGGCTCGGACCAGCCCAGCTCGCAGCCCACCG
ACACCACCGGCAAGCCTGCCGCGTCGTACGTTCCACTGGTGGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAA
TCGGTCGAGGACGTGTTCCCCCTCCCCCGCCAGCTGGTGGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTTACCGTCCGACGCCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCGGGTGACGAGGCGACCATCCTCGGCAAGGTCGTCGCCGTACTGCGCAGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376