Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LZ578_RS06435 Genome accession   NZ_CP090983
Coordinates   1282042..1283733 (+) Length   563 a.a.
NCBI ID   WP_235144309.1    Uniprot ID   -
Organism   Jeotgalibaca sp. MA1X17-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1277042..1288733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ578_RS06405 (LZ578_06405) nusB 1277232..1277681 (+) 450 WP_235144301.1 transcription antitermination factor NusB -
  LZ578_RS06410 (LZ578_06410) folD 1277805..1278656 (+) 852 WP_235144302.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  LZ578_RS06415 (LZ578_06415) xseA 1278661..1280001 (+) 1341 WP_235144304.1 exodeoxyribonuclease VII large subunit -
  LZ578_RS06420 (LZ578_06420) - 1279994..1280242 (+) 249 WP_235144305.1 exodeoxyribonuclease VII small subunit -
  LZ578_RS06425 (LZ578_06425) - 1280247..1281149 (+) 903 WP_235144306.1 polyprenyl synthetase family protein -
  LZ578_RS06430 (LZ578_06430) - 1281167..1282003 (+) 837 WP_235144307.1 TlyA family RNA methyltransferase -
  LZ578_RS06435 (LZ578_06435) recN 1282042..1283733 (+) 1692 WP_235144309.1 DNA repair protein RecN Machinery gene
  LZ578_RS06440 (LZ578_06440) miaA 1283752..1284690 (+) 939 WP_235144310.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  LZ578_RS06445 (LZ578_06445) hflX 1284717..1285979 (+) 1263 WP_235144311.1 GTPase HflX -
  LZ578_RS06450 (LZ578_06450) - 1285963..1287207 (+) 1245 WP_396326733.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  LZ578_RS06455 (LZ578_06455) - 1287491..1287808 (+) 318 WP_235144317.1 PTS lactose/cellobiose transporter subunit IIA -
  LZ578_RS06460 (LZ578_06460) - 1288174..1288491 (+) 318 WP_235144318.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 64196.01 Da        Isoelectric Point: 4.7961

>NTDB_id=646928 LZ578_RS06435 WP_235144309.1 1282042..1283733(+) (recN) [Jeotgalibaca sp. MA1X17-3]
MLQELSIKNFAIIENLQVSFEDGMTVLSGETGAGKSIIIDAVGLLAGGRGSADLIRHGENKTVLQGQFEMPSSQRLKELL
NEYGIEASENQIILQRELSRNGKNVARINGTIITVAVLRKIAENLIDIHGQNEHQELMNPQKHLMLLDRFGDEEDQVILN
QYQKLYEGYQTTKAELKELLSDEKENVQRIDLLNFQINEIEEAKLEDDQEEEQLEEERNRLVNYQKIIQGLTLSYGAIQE
DEGNGLDQIGLAMAALEKIQDFSLTYQTIYSDLSAAYYQLQECAFSIRNEMDEMSYDEERLNEIEIRLELLHQLRRKYGS
SISDIKTYYQKIALELDKISNRESYAEKLTNTFNEIKKELLEVGKKLTEKRKKTALLLKKEIEKQLKELYMEKASFEVHF
HENEKQMIRSDGLDSLEFYIATNVGEPLKPLAKVASGGELSRMMLALKTIFTQTQGITSIIFDEVDTGVSGRVAQAIANK
IHLVSEYSQVLCITHLPQVAAMADHHFYIEKEVYSDRTKTHVHSIVKKERINEIARMLAGTDITDLSVAHANELLDLAMK
QKA

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=646928 LZ578_RS06435 WP_235144309.1 1282042..1283733(+) (recN) [Jeotgalibaca sp. MA1X17-3]
ATGCTGCAAGAGTTATCTATTAAAAACTTTGCCATCATTGAAAACCTTCAAGTAAGCTTTGAAGATGGAATGACTGTACT
AAGCGGGGAAACTGGCGCTGGTAAATCAATTATTATTGATGCAGTTGGCTTATTAGCGGGTGGAAGAGGGTCCGCTGATT
TGATCCGCCATGGAGAAAATAAAACAGTGTTACAAGGACAATTTGAAATGCCATCTTCCCAACGACTTAAAGAGTTATTA
AACGAATATGGAATTGAAGCAAGTGAAAACCAAATTATTTTACAAAGGGAACTTTCAAGAAATGGAAAAAATGTGGCACG
GATTAACGGAACCATAATTACTGTAGCCGTACTGCGAAAAATCGCTGAAAACCTAATTGATATTCATGGACAAAATGAAC
ATCAAGAATTGATGAATCCCCAAAAGCATTTGATGTTATTAGATCGGTTTGGAGATGAAGAAGATCAAGTAATCTTGAAC
CAGTATCAAAAACTTTATGAAGGCTATCAAACTACAAAAGCAGAGTTAAAAGAACTTCTTTCTGATGAAAAAGAAAATGT
TCAACGAATTGATTTATTGAATTTTCAAATAAATGAAATTGAAGAAGCCAAACTTGAAGATGATCAGGAAGAAGAGCAGT
TAGAAGAAGAACGCAATCGCTTAGTGAATTATCAAAAAATTATCCAAGGATTGACGCTTTCTTACGGAGCAATACAAGAG
GACGAAGGAAATGGATTAGATCAAATTGGCTTAGCAATGGCTGCTTTAGAAAAAATTCAAGACTTTAGTCTTACCTATCA
AACGATTTATTCAGATCTTTCCGCTGCCTACTATCAACTTCAAGAATGTGCTTTTTCTATTCGGAATGAAATGGATGAGA
TGAGTTATGATGAAGAAAGATTAAATGAAATAGAAATCCGGTTGGAACTCCTTCATCAGTTACGAAGAAAATATGGTAGT
TCAATTTCTGATATAAAGACCTATTACCAAAAAATTGCTTTGGAATTAGATAAAATTTCAAACCGGGAAAGTTATGCTGA
AAAGCTTACAAATACCTTTAATGAAATAAAAAAAGAACTCCTAGAAGTCGGAAAAAAGTTAACTGAAAAAAGAAAAAAGA
CCGCACTTTTACTGAAAAAAGAAATCGAAAAACAATTAAAAGAATTATATATGGAGAAAGCTAGTTTTGAAGTCCACTTT
CATGAAAATGAAAAGCAAATGATCCGTTCTGATGGTCTAGATTCTTTAGAATTTTATATTGCTACAAATGTCGGTGAACC
GCTGAAACCATTAGCAAAAGTTGCTAGTGGAGGAGAACTATCTCGGATGATGTTAGCATTGAAAACTATTTTTACACAGA
CTCAAGGAATCACTAGTATTATTTTTGATGAAGTAGATACAGGAGTGAGTGGAAGAGTAGCTCAAGCGATCGCTAATAAA
ATTCATTTGGTTTCAGAATATTCACAAGTGCTCTGTATTACTCATTTACCACAAGTAGCAGCAATGGCAGACCATCATTT
TTATATAGAAAAAGAAGTTTACAGTGATCGTACTAAAACTCATGTCCATTCTATTGTCAAAAAGGAACGTATCAATGAGA
TTGCTCGTATGTTAGCTGGAACAGATATTACTGATTTATCTGTAGCACATGCAAATGAGCTATTAGATTTAGCTATGAAG
CAAAAGGCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.387

100

0.501