Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZ578_RS00755 Genome accession   NZ_CP090983
Coordinates   163523..164905 (-) Length   460 a.a.
NCBI ID   WP_235145502.1    Uniprot ID   -
Organism   Jeotgalibaca sp. MA1X17-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 158523..169905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ578_RS00735 (LZ578_00735) - 158927..159334 (-) 408 WP_235145499.1 Mini-ribonuclease 3 -
  LZ578_RS00740 (LZ578_00740) cysS 159331..160746 (-) 1416 WP_235145500.1 cysteine--tRNA ligase -
  LZ578_RS00745 (LZ578_00745) gltX 160877..162385 (-) 1509 WP_235145501.1 glutamate--tRNA ligase -
  LZ578_RS00750 (LZ578_00750) - 162391..163496 (-) 1106 Protein_143 PIN/TRAM domain-containing protein -
  LZ578_RS00755 (LZ578_00755) radA 163523..164905 (-) 1383 WP_235145502.1 DNA repair protein RadA Machinery gene
  LZ578_RS00760 (LZ578_00760) - 165035..165547 (-) 513 WP_235145503.1 dUTP diphosphatase -
  LZ578_RS00765 (LZ578_00765) - 165796..166905 (+) 1110 WP_235145504.1 ABC transporter ATP-binding protein -
  LZ578_RS00770 (LZ578_00770) - 166983..168473 (-) 1491 WP_235145505.1 alpha-amylase -
  LZ578_RS00775 (LZ578_00775) - 168738..169475 (+) 738 WP_235145506.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50434.84 Da        Isoelectric Point: 6.6967

>NTDB_id=646915 LZ578_RS00755 WP_235145502.1 163523..164905(-) (radA) [Jeotgalibaca sp. MA1X17-3]
MAKKKTVKYVCQACGYESPKWLGKCPNCGGWNQMEEEKEASLALKHQPRANFTGQTAEAVPIQDIHIENIPRIETDMGEV
NHVLGGGIVPGSLILIGGDPGIGKSTLLLQVSAQINNKGLLVLYVTGEESSNQIKLRAERLGVKGNDFYIYPETDIDSIS
QTIQKLKPELVVIDSIQTMLKADNDSAAGSVSQVRETTQEFMRIAKSNNIAIFLVGHVTKEGAIAGPRMLEHMVDTVLYF
EGDRHHSFRILRAVKNRFGSTNEIGVFDMVEGGLKEVTNPSEMFLEERLAGASGSAVVASMEGTRPILAEIQCLITPTVF
GTARRTASGLDYNRVSLIMAVLEKRAGLLLQNQDAYFKSTGGVKLDEPAIDLAIATSIASSYWDTETSPRECFIGEIGLT
GEIRRVNRIEQRVNEAEKLGFKKIYVPKNNLTGWKHPEGIELIGVSTVSETLRKVFPKKA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=646915 LZ578_RS00755 WP_235145502.1 163523..164905(-) (radA) [Jeotgalibaca sp. MA1X17-3]
ATGGCAAAAAAGAAGACGGTAAAATATGTCTGCCAAGCCTGTGGATACGAATCTCCGAAGTGGTTGGGGAAGTGTCCCAA
CTGTGGTGGTTGGAATCAAATGGAAGAAGAAAAAGAGGCCTCTCTGGCGTTAAAGCATCAGCCACGTGCAAATTTCACGG
GTCAAACTGCTGAAGCGGTACCCATTCAAGATATTCATATTGAAAATATTCCTCGAATTGAAACAGATATGGGAGAGGTT
AATCACGTTTTAGGTGGAGGAATTGTACCAGGATCTTTGATTTTAATTGGTGGTGATCCTGGAATTGGGAAATCAACTTT
GCTCTTACAAGTATCTGCACAAATTAATAATAAAGGTTTACTAGTCCTCTATGTTACAGGTGAAGAAAGTTCCAATCAAA
TTAAGTTACGTGCAGAACGTTTGGGTGTTAAAGGAAATGATTTTTATATTTATCCAGAGACAGATATAGATTCCATCTCA
CAAACGATCCAGAAATTAAAGCCGGAACTGGTTGTGATTGACTCTATTCAAACGATGCTAAAAGCAGATAATGATAGTGC
TGCAGGAAGTGTTTCTCAAGTAAGAGAAACCACACAGGAATTTATGCGAATCGCAAAATCTAATAATATCGCTATTTTTT
TAGTAGGACATGTGACAAAAGAAGGGGCTATCGCAGGACCACGTATGTTAGAGCATATGGTGGATACGGTCCTTTACTTT
GAAGGAGATCGTCATCACTCTTTTCGAATTTTAAGAGCTGTAAAAAATCGGTTTGGGTCTACAAATGAGATCGGCGTCTT
TGATATGGTAGAAGGCGGATTGAAAGAAGTAACGAATCCATCTGAAATGTTTCTAGAAGAGCGATTGGCCGGTGCATCTG
GTTCGGCTGTAGTAGCTTCCATGGAGGGGACAAGGCCCATATTGGCTGAAATCCAATGTTTAATTACTCCAACCGTCTTT
GGAACGGCACGAAGAACAGCAAGTGGATTAGATTATAATCGTGTGTCATTAATTATGGCCGTCTTAGAAAAACGGGCAGG
ATTGTTATTGCAGAATCAAGATGCATACTTTAAGTCAACTGGTGGAGTAAAATTAGACGAGCCTGCTATTGACTTAGCGA
TTGCAACGAGTATTGCTTCCAGTTATTGGGATACTGAAACGTCGCCAAGAGAATGCTTTATTGGTGAAATTGGCTTAACG
GGTGAGATTCGTCGTGTAAATCGAATAGAACAACGCGTAAATGAAGCTGAAAAATTAGGATTTAAAAAAATCTATGTACC
TAAAAATAACTTAACAGGTTGGAAACATCCAGAAGGAATTGAGTTAATTGGAGTTTCTACTGTTTCAGAGACACTCCGTA
AAGTTTTTCCAAAGAAAGCGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

65.57

99.13

0.65
  radA Streptococcus pneumoniae D39

65.57

99.13

0.65
  radA Streptococcus pneumoniae R6

65.57

99.13

0.65
  radA Streptococcus pneumoniae TIGR4

65.57

99.13

0.65
  radA Streptococcus mitis NCTC 12261

65.57

99.13

0.65
  radA Streptococcus mitis SK321

65.57

99.13

0.65
  radA Bacillus subtilis subsp. subtilis str. 168

64.924

99.783

0.648