Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHA84_RS16260 Genome accession   NZ_CP107845
Coordinates   3519905..3520882 (-) Length   325 a.a.
NCBI ID   WP_053679648.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3514905..3525882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS16240 (OHA84_16205) - 3515169..3515939 (+) 771 WP_266971081.1 DUF6227 family protein -
  OHA84_RS16245 (OHA84_16210) pfkB 3516003..3516968 (-) 966 WP_266971079.1 1-phosphofructokinase -
  OHA84_RS16250 (OHA84_16215) - 3517193..3518758 (-) 1566 WP_053679644.1 MFS transporter -
  OHA84_RS16255 (OHA84_16220) - 3518821..3519765 (+) 945 WP_053679646.1 YafY family protein -
  OHA84_RS16260 (OHA84_16225) rpoS 3519905..3520882 (-) 978 WP_053679648.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHA84_RS16265 (OHA84_16230) - 3521105..3521638 (+) 534 WP_078999029.1 GNAT family N-acetyltransferase -
  OHA84_RS16270 (OHA84_16235) - 3521635..3522402 (-) 768 WP_266974060.1 dioxygenase -
  OHA84_RS16275 (OHA84_16240) - 3522518..3524050 (-) 1533 WP_053679651.1 MFS transporter -
  OHA84_RS16280 (OHA84_16245) - 3524135..3524809 (-) 675 WP_266971076.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36407.11 Da        Isoelectric Point: 5.0353

>NTDB_id=646901 OHA84_RS16260 WP_053679648.1 3519905..3520882(-) (rpoS) [Streptomyces sp. NBC_00513]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYARQILDDAIERTGETPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEVAAELDSTAKRVGDVLDWARDPVSLNMGVDDDGDTQFGDLLEDT
SAVSPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=646901 OHA84_RS16260 WP_053679648.1 3519905..3520882(-) (rpoS) [Streptomyces sp. NBC_00513]
ATGGCAACCCGCGCCGTCGCCCGCCGTCAGTCCACGAGCAGCGCTCGCGCCGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTCGACGAGATCGCGCGCACCCCGCTGCTCGACGCGGCCAAGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCGACAGATCCTCGACGACGCGATAGAGCGCACGGGGGAGACCCCGGCCCGCGAGGAACTGGAG
GCGCTCGCCGCCGAAGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCGAACCTCCGCCTCGTCGTGGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCGCTGCTCGACCTCATCCAGGAAGGCAACGCGGGCCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGTCGGGTGCAGCGCGAGTTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCGGAGGTCGCCGCCGAGCTGGACTCGACGGCGAAGCGCGTCGGCGACGTACTGGACT
GGGCCCGTGACCCGGTCAGCCTCAACATGGGCGTGGACGACGACGGCGACACGCAGTTCGGTGACCTGCTGGAGGACACC
TCGGCGGTCTCCCCGGAGCAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAACTGGAGGACCTGCTCGGCAAGCTCGACCA
GCGCACCGCGTCGATCATCAAGATGCGTTACGGCATCGATGACGGTCGGGAGCGTACGCTGACAGAGGTGGGCAAGCAGC
ACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGTTGCTGGAACTGAAGAAGATGGCGCGTGACACCGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70, region 4 (Sigma70_r4)

(261-314)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366