Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L0M13_RS08440 Genome accession   NZ_CP090977
Coordinates   1597854..1599551 (+) Length   565 a.a.
NCBI ID   WP_235199100.1    Uniprot ID   -
Organism   Planococcus sp. 107-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1592854..1604551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0M13_RS08415 (L0M13_08415) xseB 1593266..1593502 (+) 237 WP_235199098.1 exodeoxyribonuclease VII small subunit -
  L0M13_RS08420 (L0M13_08420) - 1593499..1594377 (+) 879 WP_235199099.1 polyprenyl synthetase family protein -
  L0M13_RS08425 (L0M13_08425) dxs 1594470..1596370 (+) 1901 Protein_1628 1-deoxy-D-xylulose-5-phosphate synthase -
  L0M13_RS08430 (L0M13_08430) - 1596367..1597192 (+) 826 Protein_1629 TlyA family RNA methyltransferase -
  L0M13_RS08435 (L0M13_08435) ahrC 1597387..1597836 (+) 450 WP_052651734.1 transcriptional regulator AhrC/ArgR -
  L0M13_RS08440 (L0M13_08440) recN 1597854..1599551 (+) 1698 WP_235199100.1 DNA repair protein RecN Machinery gene
  L0M13_RS08445 (L0M13_08445) spo0A 1599585..1600343 (+) 759 WP_235199101.1 sporulation transcription factor Spo0A -
  L0M13_RS08450 (L0M13_08450) - 1600479..1600922 (+) 444 WP_235199102.1 glycerophosphodiester phosphodiesterase family protein -
  L0M13_RS08455 (L0M13_08455) - 1600931..1601203 (+) 273 WP_235199103.1 hypothetical protein -
  L0M13_RS08460 (L0M13_08460) - 1601231..1601477 (-) 247 Protein_1635 DUF2627 domain-containing protein -
  L0M13_RS08465 (L0M13_08465) - 1601601..1603646 (+) 2046 WP_235199105.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63798.58 Da        Isoelectric Point: 5.2198

>NTDB_id=646871 L0M13_RS08440 WP_235199100.1 1597854..1599551(+) (recN) [Planococcus sp. 107-1]
MLRELDIRNFAIIDSLTVSFTEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFTLDNEKHPVFRK
LEEFGIDSSDGDILLRRELNDRGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLYLLDQFAGKTLTKAR
ESYSHTYDKYMKLKREFASYNENEQQIAQRIDLLTFQLREIEAAELVAGEEEELQQERKKLQNFNKIFESVSAAHEAIQG
ESKGLDWVGSAMSELEHAASVDEQLNSHSETLSSAFYLIQDVSTDIKRILDDMEFDPARLNEIEQRLVLLQSLKRKYGAS
VEDILLYHETQVDELDKLINRDQRIQLDQEKLKELTEDLRVEAEELTILRKKAAAKLSKAIMEQLRELHMGKASFEVNFA
SLPGGRFDRNGRDAIAFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKKVEKQRTTTAVHELEGYERTEEMSRMLSGAEITDLTLQHAEELLTLARDR
KLTMR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=646871 L0M13_RS08440 WP_235199100.1 1597854..1599551(+) (recN) [Planococcus sp. 107-1]
ATGCTTCGGGAATTGGATATACGCAATTTTGCTATTATCGACTCCTTGACAGTCAGCTTTACAGAAGGGCTGACGGTTTT
GACTGGGGAAACTGGGGCCGGCAAATCGATTATCATCGATGCGGTCCATTTATTGGCTGGGGGAAGAGGCAGCCAAGAGT
TTATTCGCCATGGCGCTAAAAAAGCGGAAATCGAAGGATTGTTCACACTGGACAATGAAAAGCATCCGGTGTTTCGCAAA
TTAGAAGAATTCGGCATCGATTCGAGTGACGGGGATATTCTTCTGCGCCGGGAATTGAATGACCGCGGAAAAAATGTTTG
CCGGATCAATGGCAAGCTTGTCACGATCTCTATTTTGCGTGAAGTGGGCGCTGCCCTCATTGATATACACGGCCAGCACG
AGACCCAGGAATTGATGGATGAAAAGCAGCATCTTTATCTGCTGGATCAGTTTGCCGGAAAAACCTTGACCAAAGCGAGA
GAAAGCTATTCCCATACGTATGATAAATACATGAAGCTGAAGCGGGAATTTGCCTCATATAATGAAAATGAGCAGCAAAT
TGCACAGCGCATCGATTTACTGACGTTCCAATTGCGGGAAATTGAAGCTGCCGAACTGGTAGCAGGGGAAGAGGAAGAGC
TTCAGCAAGAGCGTAAGAAACTTCAAAACTTCAATAAAATCTTCGAATCGGTATCGGCCGCCCATGAAGCCATCCAAGGC
GAATCGAAGGGACTCGATTGGGTAGGTTCAGCGATGTCGGAACTCGAGCATGCCGCTTCAGTGGATGAACAGCTGAATAG
CCATTCCGAAACACTTTCGAGCGCCTTTTATTTGATCCAAGATGTATCGACTGATATTAAACGGATACTGGATGACATGG
AATTCGATCCAGCCAGGTTGAATGAAATTGAACAGCGTCTTGTCTTGCTCCAATCGCTTAAACGGAAATACGGAGCTTCG
GTGGAAGACATCCTTTTGTATCACGAAACGCAAGTGGACGAATTGGATAAATTGATCAACCGTGACCAGCGCATTCAGCT
TGACCAGGAAAAGCTGAAGGAATTGACGGAAGACCTGCGCGTGGAAGCGGAAGAACTGACGATCTTACGGAAAAAAGCAG
CTGCCAAGCTCAGCAAAGCCATCATGGAACAATTGCGCGAACTCCATATGGGGAAAGCTTCTTTCGAAGTGAATTTTGCC
TCGCTGCCGGGTGGACGGTTTGACCGCAATGGCCGTGATGCGATTGCGTTCTACATTTCAACCAATCTTGGCGAACCATT
GAAGCCCTTGACAAAAGTGGCTTCCGGCGGGGAATTGTCGCGGATGATGCTTGCGCTGAAAACGATTTTTTCGAAACACC
AAGGCATTACTTCCATTATTTTCGATGAAGTGGATACGGGAGTCAGCGGCAGAGTGGCACAAGCGATCGCCGAAAAAATC
GCTGCCATCTCGGTTCATTCCCAGGTTCTGTGCATTTCGCATTTGCCGCAAGTTGCAGCTATGGCCGACCAGCATTTATT
CATCGAAAAGAAAGTGGAGAAACAGCGTACCACTACAGCGGTCCATGAACTAGAGGGCTATGAACGGACAGAAGAAATGA
GCAGAATGCTTTCAGGAGCAGAAATTACTGATTTGACTTTACAGCATGCCGAAGAATTACTGACGCTTGCGCGCGACAGA
AAACTTACCATGAGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.778

100

0.538