Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L0M13_RS02220 Genome accession   NZ_CP090977
Coordinates   388986..389936 (+) Length   316 a.a.
NCBI ID   WP_235198120.1    Uniprot ID   -
Organism   Planococcus sp. 107-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383986..394936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0M13_RS02205 (L0M13_02205) hflX 384672..385942 (+) 1271 Protein_427 GTPase HflX -
  L0M13_RS02210 (L0M13_02210) - 385982..387703 (-) 1722 WP_235198118.1 ABC transporter ATP-binding protein -
  L0M13_RS02215 (L0M13_02215) - 387864..388721 (+) 858 WP_235198119.1 DUF6612 family protein -
  L0M13_RS02220 (L0M13_02220) ceuB 388986..389936 (+) 951 WP_235198120.1 ABC transporter permease Machinery gene
  L0M13_RS02225 (L0M13_02225) - 389929..390879 (+) 951 WP_235198121.1 iron chelate uptake ABC transporter family permease subunit -
  L0M13_RS02230 (L0M13_02230) - 390876..391636 (+) 761 Protein_432 ABC transporter ATP-binding protein -
  L0M13_RS02235 (L0M13_02235) - 391658..392614 (+) 957 WP_235198122.1 siderophore ABC transporter substrate-binding protein -
  L0M13_RS02240 (L0M13_02240) - 392797..393096 (+) 300 WP_235198123.1 antibiotic biosynthesis monooxygenase -
  L0M13_RS02245 (L0M13_02245) - 393258..394325 (+) 1068 WP_235198124.1 ABC transporter permease -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34799.02 Da        Isoelectric Point: 9.9779

>NTDB_id=646861 L0M13_RS02220 WP_235198120.1 388986..389936(+) (ceuB) [Planococcus sp. 107-1]
MKKRYLIPALIILSVISLFVGVSSISIVDLFDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMTVAFAFALAGTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYKADVI
QNMSAWLQGDFSMIMKGSYELLYISVPVFIIAYVYANRFTVAGMGEDFSKNLGLKYRSVVNIGLVLVALITATVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLACDILGRVLIYPYEISISLMVGVIGSFIFLFLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=646861 L0M13_RS02220 WP_235198120.1 388986..389936(+) (ceuB) [Planococcus sp. 107-1]
ATGAAAAAACGTTATTTAATACCAGCACTGATCATACTGTCTGTTATTTCGCTGTTTGTCGGAGTCAGCAGTATCAGCAT
CGTCGATCTGTTTGACTTCCAATCGGAGGAAACGCAGATTTTCTTGATCAGCCGTCTGCCAAGGTTGGTCGCTATATTGT
TGGCGGGTGCAGGAATGAGTATGGCAGGACTCATCATGCAGCAATTGAGCCGCAATAAATTTGTGTCTCCGACGACGGCA
GGTACACTCGATGCTACTCGACTGGGGATTCTCGTCTCGATGCTATTGTTTGCCAATGCATCGATGCTTGAGAAAATGAC
AGTGGCATTCGCTTTTGCACTTGCCGGAACTTTTCTGTTTATGCAAATTCTTGACCGCATCAAATTCAAAGATGCTATAT
TCATTCCGTTAGTCGGATTGATGTTCGGGAATATCCTTTCTTCCATTACGACGTTCTTCGCTTATAAAGCGGATGTAATC
CAGAACATGTCAGCATGGCTGCAAGGAGATTTCTCAATGATCATGAAAGGGAGTTATGAACTCCTCTACATCAGTGTTCC
GGTCTTTATCATTGCCTATGTTTACGCGAATCGCTTTACAGTGGCTGGAATGGGGGAAGATTTCTCGAAGAATCTGGGGT
TGAAATACCGCAGCGTCGTGAATATCGGACTGGTGCTCGTGGCATTGATCACAGCGACTGTCGTCCTGACGGTCGGCATG
ATCCCGTTTCTCGGATTGATCATCCCGAACATCGTTTCAATTTTCAAAGGTGACCACCTTCAAAAAACATTGCCGCATAC
GGCGATGCTTGGGGCCATTTTCTTGCTGGCATGCGATATTTTAGGAAGAGTATTAATTTACCCGTATGAAATTTCCATCA
GTTTAATGGTCGGTGTCATCGGAAGCTTTATTTTCCTCTTCCTTCTGTTTAGGAGGAAAGCCTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528