Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0M13_RS00040 Genome accession   NZ_CP090977
Coordinates   7948..9324 (+) Length   458 a.a.
NCBI ID   WP_235197790.1    Uniprot ID   -
Organism   Planococcus sp. 107-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2948..14324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0M13_RS00015 (L0M13_00015) - 2948..3193 (+) 246 WP_235197787.1 hypothetical protein -
  L0M13_RS00020 (L0M13_00020) - 3348..3818 (+) 471 WP_235199229.1 CtsR family transcriptional regulator -
  L0M13_RS00025 (L0M13_00025) - 3830..4363 (+) 534 WP_235197788.1 UvrB/UvrC motif-containing protein -
  L0M13_RS00030 (L0M13_00030) - 4353..5447 (+) 1095 WP_235197789.1 protein arginine kinase -
  L0M13_RS00035 (L0M13_00035) clpC 5444..7887 (+) 2444 Protein_4 ATP-dependent protease ATP-binding subunit ClpC -
  L0M13_RS00040 (L0M13_00040) radA 7948..9324 (+) 1377 WP_235197790.1 DNA repair protein RadA Machinery gene
  L0M13_RS00045 (L0M13_00045) - 9428..10525 (+) 1098 WP_235197791.1 PIN/TRAM domain-containing protein -
  L0M13_RS00050 (L0M13_00050) ispD 10539..11234 (+) 696 WP_235197792.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L0M13_RS00055 (L0M13_00055) ispF 11231..11689 (+) 459 Protein_8 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  L0M13_RS00060 (L0M13_00060) gltX 11771..13234 (+) 1464 WP_235199230.1 glutamate--tRNA ligase -
  L0M13_RS00065 (L0M13_00065) cysE 13575..14213 (+) 639 WP_235197793.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49937.43 Da        Isoelectric Point: 6.4250

>NTDB_id=646859 L0M13_RS00040 WP_235197790.1 7948..9324(+) (radA) [Planococcus sp. 107-1]
MAKKKTKFVCQSCGYESAKWMGKCPGCGEWNQMVEEVEVAAPKGTRGAFQHSAAVPQKAVSINAIETKEEPRVETELEEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGSRVLYISGEESIRQTKLRAQRLNASSSELYIYAETNLELIH
HTIEEVAPDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGAAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDQNRVSLLMAVLEKRMGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSYRDLAPNVYDCIIGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=646859 L0M13_RS00040 WP_235197790.1 7948..9324(+) (radA) [Planococcus sp. 107-1]
ATGGCTAAGAAAAAGACGAAGTTTGTATGTCAGTCGTGCGGTTATGAGTCAGCTAAATGGATGGGGAAATGTCCAGGCTG
CGGAGAATGGAATCAGATGGTGGAAGAAGTGGAAGTGGCTGCACCTAAAGGAACGCGAGGAGCGTTTCAGCATTCGGCTG
CAGTTCCGCAAAAAGCGGTTTCCATAAATGCCATTGAGACAAAAGAAGAGCCGCGCGTAGAAACCGAACTTGAAGAATTA
AACCGTGTACTCGGCGGCGGGATTGTTCCAGGATCGCTTGTTTTGATCGGTGGAGATCCCGGAATCGGGAAGTCGACTTT
GCTGCTGCAGGTATCTGCGATGCTTGCGAACAGTGGAAGCCGCGTCTTGTATATTTCAGGTGAAGAATCGATTCGCCAAA
CCAAATTGCGCGCACAGCGTTTGAATGCCTCTTCTTCGGAACTCTATATCTATGCGGAGACCAATTTGGAATTGATCCAT
CATACGATTGAAGAAGTGGCACCGGATTTCGTCATTGTCGATTCCATCCAGACGGTACACCATCCGGAAGTGACATCTGC
TCCCGGCAGTGTGACCCAAGTTCGGGAAAGCACGGCTGAATTAATGCGGATCGCTAAGACGAAGAATATTGCTATTTTCC
TGGTAGGACACGTAACAAAAGAAGGGCAGATTGCCGGCCCTAGAATCTTGGAGCATATGGTGGATACCGTTTTGTATTTT
GAAGGCGAACGCCATCATACGTATCGGATTTTGCGAAGTGTCAAAAACCGTTTCGGGTCGACCAATGAAATCGCGATTTT
TGAAATGCTGCAAGGCGGATTGAAAGAAGTGCTGAATCCGTCTGAATTATTTCTTCAAGAACGCTCAAGCGGGGCAGCAG
GCTCTACTGTTGTAGCATCCATGGAAGGGACGCGTCCGATTTTGGTTGAAATCCAAGCATTGGTCACGCCTTCAAGCTTT
AACTATCCGAAGCGGATGGCTACGGGAATCGATCAAAACCGGGTGTCGCTTTTGATGGCCGTGCTTGAGAAGCGGATGGG
CATGTTGCTGCAGGCACAGGACGCCTATATCAAAGTTGCGGGCGGCGTAAAATTGGACGAACCGGCGATCGACTTGGCCG
TACTTGCGAGCATTGTTTCAAGTTACCGCGATCTCGCACCGAATGTCTATGATTGTATAATTGGTGAAGTAGGTTTAACA
GGGGAGATCCGACGGGTATCCCGTATTGAACAGCGAGTTCAGGAAGCTGCGAAATTAGGGTTTAAACGGGCCATTATTCC
AGCTTCGAATCTTGGCGGCTGGGATTATCCGGAAGGAATCCGAGTAGTCGGCGTTGAAAGTGTAAATGATGCGTTAAAAG
AGATTTTCCCACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.406

98.908

0.716
  radA Streptococcus pneumoniae Rx1

63.377

99.563

0.631
  radA Streptococcus pneumoniae D39

63.377

99.563

0.631
  radA Streptococcus pneumoniae R6

63.377

99.563

0.631
  radA Streptococcus pneumoniae TIGR4

63.377

99.563

0.631
  radA Streptococcus mitis NCTC 12261

63.377

99.563

0.631
  radA Streptococcus mitis SK321

63.377

99.563

0.631