Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0B70_RS07065 Genome accession   NZ_CP090976
Coordinates   1480973..1482319 (+) Length   448 a.a.
NCBI ID   WP_235141127.1    Uniprot ID   -
Organism   Kaistella sp. 97-N-M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475973..1487319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B70_RS07050 (L0B70_07050) - 1476144..1476761 (+) 618 WP_235141124.1 ribonuclease HII -
  L0B70_RS07055 (L0B70_07055) yidC 1476831..1478645 (-) 1815 WP_235141125.1 membrane protein insertase YidC -
  L0B70_RS07060 (L0B70_07060) - 1478802..1480409 (-) 1608 WP_235141126.1 CTP synthase -
  L0B70_RS07065 (L0B70_07065) radA 1480973..1482319 (+) 1347 WP_235141127.1 DNA repair protein RadA Machinery gene
  L0B70_RS07070 (L0B70_07070) - 1482380..1482958 (+) 579 WP_235141128.1 transposase -
  L0B70_RS07075 (L0B70_07075) - 1483014..1483595 (+) 582 WP_235141129.1 ACP phosphodiesterase -
  L0B70_RS07080 (L0B70_07080) - 1483582..1484082 (-) 501 WP_235141130.1 DUF6702 family protein -
  L0B70_RS07085 (L0B70_07085) - 1484139..1484720 (+) 582 WP_235141131.1 HupE/UreJ family protein -
  L0B70_RS07090 (L0B70_07090) - 1484800..1487172 (+) 2373 WP_235141132.1 M1 family metallopeptidase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49626.15 Da        Isoelectric Point: 6.1977

>NTDB_id=646854 L0B70_RS07065 WP_235141127.1 1480973..1482319(+) (radA) [Kaistella sp. 97-N-M2]
MAKVKTAYFCQNCGSQYPQWLGQCKNCGEWNTLVEEIVEKSPAKSYIDKSKQHIINIIEVETNEEQRITTPSEELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKTILYVSGEESASQIKMRADRLTEVQNPNCFLFTETSVEKILHEAKKLK
PDFMIIDSIQTLQSQLIESSPGTVSQIRETSNEIIKFSKETNTPTFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRASKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLIEIQALVSSAVYGTPQRSC
TGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTGDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPIP
QIEQRISEAEKLGYEKIFVSNLNKISKKKFGIIVEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=646854 L0B70_RS07065 WP_235141127.1 1480973..1482319(+) (radA) [Kaistella sp. 97-N-M2]
ATGGCAAAAGTGAAAACGGCATATTTCTGTCAGAATTGCGGATCGCAGTATCCACAGTGGCTTGGGCAGTGCAAAAATTG
TGGGGAATGGAATACTTTGGTGGAAGAAATTGTAGAGAAATCGCCCGCGAAAAGTTATATCGATAAATCGAAGCAGCACA
TTATCAACATTATAGAAGTTGAAACCAATGAAGAGCAGCGCATTACCACGCCATCCGAGGAGTTGAACCGTGTGCTTGGC
GGCGGAATTGTTTTAGGCTCCGTCACGCTTATCGGTGGCGAACCCGGCATAGGAAAATCCACGTTATTGCTGCAGCTCGC
CTTGAAAATGAAGAAAACCATTCTCTATGTTTCGGGCGAGGAAAGCGCGTCTCAAATTAAGATGCGTGCAGACCGGCTGA
CCGAGGTTCAAAATCCGAACTGCTTTTTGTTTACGGAAACTTCGGTAGAAAAAATTCTGCACGAAGCGAAGAAATTGAAG
CCGGATTTCATGATCATCGACTCCATTCAAACGTTGCAGAGTCAGCTCATCGAAAGTTCGCCCGGAACCGTTTCCCAAAT
CCGCGAAACGTCCAATGAGATCATAAAATTTTCCAAGGAAACCAATACACCGACTTTTTTAGTTGGACACATTACAAAAG
ACGGCCAAATCGCCGGTCCAAAGGTTTTGGAACATATGGTAGATGTCGTTTTGAATTTTGATGGCGACCGGAATCATTTG
TTCCGCCTGTTGCGAGCGAGCAAGAACCGCTTCGGTTCCACAGCGGAAATCGGCATTTACGAGATGGTTTCGCAGGGCTT
GAAAGAGATCAAAAATCCATCGGAAATTTTGATTACGAAAAAATTTGAGGAACTTTCCGGGAATTCCGTGGCCGTAACGT
TAGAAGGAAACCGACCCATGCTCATCGAAATTCAGGCACTTGTAAGTTCTGCGGTCTACGGAACGCCGCAAAGAAGCTGC
ACAGGTTTCGATTCCAAAAGACTCAATATGCTTTTGGCGGTTTTAGAAAAGAGAGCCGGCTTTCAATTGGGTGCAAAGGA
TGTTTTTCTGAATATCACCGGCGGAATAAAAACCGGGGATCCGGCTTTGGATCTGGCTGTTGTCGCGTCGATCCTTTCTT
CCAACGAAGATATTGCCATCTCCGAACATTTTTGTTTCGCCGGCGAAATTGGTTTGAGCGGCGAAATCCGTCCTATTCCA
CAAATCGAACAACGAATTTCCGAAGCGGAAAAGTTGGGTTATGAGAAGATTTTTGTATCTAACCTTAATAAGATTTCCAA
AAAGAAATTTGGAATTATTGTGGAGGAAGTGAGCAAAATTGAGGATTTTCACGAACGGCTGTTTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-422)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.009

100

0.484
  radA Streptococcus mitis NCTC 12261

47.797

100

0.484
  radA Streptococcus pneumoniae Rx1

47.797

100

0.484
  radA Streptococcus pneumoniae D39

47.797

100

0.484
  radA Streptococcus pneumoniae R6

47.797

100

0.484
  radA Streptococcus pneumoniae TIGR4

47.797

100

0.484
  radA Streptococcus mitis SK321

49.409

94.42

0.467