Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHS17_RS25410 Genome accession   NZ_CP107836
Coordinates   5581893..5582687 (-) Length   264 a.a.
NCBI ID   WP_026171816.1    Uniprot ID   A0ABY6PP80
Organism   Streptomyces sp. NBC_00523     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5576893..5587687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS17_RS25395 (OHS17_25420) - 5577275..5577865 (+) 591 WP_330314005.1 GNAT family N-acetyltransferase -
  OHS17_RS25400 (OHS17_25425) - 5577926..5579761 (+) 1836 WP_330314006.1 IucA/IucC family siderophore biosynthesis protein -
  OHS17_RS25405 (OHS17_25430) - 5579812..5581782 (+) 1971 WP_018105327.1 ATP-dependent DNA helicase -
  OHS17_RS25410 (OHS17_25435) dinR/lexA 5581893..5582687 (-) 795 WP_026171816.1 transcriptional repressor LexA Regulator
  OHS17_RS25415 (OHS17_25440) nrdR 5583205..5583717 (+) 513 WP_018105329.1 transcriptional regulator NrdR -
  OHS17_RS25420 (OHS17_25445) - 5583882..5586785 (+) 2904 WP_020207322.1 vitamin B12-dependent ribonucleotide reductase -
  OHS17_RS25425 (OHS17_25450) - 5586852..5587388 (-) 537 WP_330314007.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28592.36 Da        Isoelectric Point: 6.9854

>NTDB_id=646772 OHS17_RS25410 WP_026171816.1 5581893..5582687(-) (dinR/lexA) [Streptomyces sp. NBC_00523]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=646772 OHS17_RS25410 WP_026171816.1 5581893..5582687(-) (dinR/lexA) [Streptomyces sp. NBC_00523]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGCCCGGAGCCCGGGCGCCCAGCGCGCTCGCTTCCCGGACGACCTCCCGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTCATCCGGGATTCCGTGCAGCGGCGTGGCTATCCG
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTCTCCAGCACCTCCTCCGTCGCCCATCAGCTGATGGCGCTGGAGCG
GAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTACGCGGCTCGGACCAGCCGAGCACGCAGCCGA
CCGACACCACGGGCAAGCCCGCCGCCTCCTACGTGCCGCTGGTGGGCCGGATCGCCGCCGGTGGGCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTGGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAAC
GCCGCATACCAGCCGATCCCCGGCGATGAGGCCACGATCCTCGGCAAGGTCGTCGCGGTGCTGCGCAGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371