Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG710_RS23265 Genome accession   NZ_CP107834
Coordinates   5199434..5200228 (-) Length   264 a.a.
NCBI ID   WP_239221377.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5194434..5205228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS23250 (OG710_23270) - 5194641..5195405 (+) 765 WP_330242326.1 GNAT family N-acetyltransferase -
  OG710_RS23255 (OG710_23275) - 5195466..5197313 (+) 1848 WP_330241026.1 IucA/IucC family siderophore biosynthesis protein -
  OG710_RS23260 (OG710_23280) - 5197352..5199322 (+) 1971 WP_330241027.1 ATP-dependent DNA helicase -
  OG710_RS23265 (OG710_23285) dinR/lexA 5199434..5200228 (-) 795 WP_239221377.1 transcriptional repressor LexA Regulator
  OG710_RS23270 (OG710_23290) nrdR 5200733..5201245 (+) 513 WP_111338597.1 transcriptional regulator NrdR -
  OG710_RS23275 (OG710_23295) - 5201408..5204314 (+) 2907 WP_330241028.1 vitamin B12-dependent ribonucleotide reductase -
  OG710_RS23280 (OG710_23300) - 5204642..5204785 (+) 144 WP_267942482.1 hypothetical protein -
  OG710_RS23285 - 5204979..5205206 (+) 228 WP_330241029.1 phage integrase N-terminal SAM-like domain-containing protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28562.33 Da        Isoelectric Point: 6.9854

>NTDB_id=646694 OG710_RS23265 WP_239221377.1 5199434..5200228(-) (dinR/lexA) [Streptomyces sp. NBC_00525]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPADTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=646694 OG710_RS23265 WP_239221377.1 5199434..5200228(-) (dinR/lexA) [Streptomyces sp. NBC_00525]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGCCCGGAGCCCGGCCGCCCAGCGCGCTCGCTCCCCGGACGCCCTCCCGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTCATCCGGGATTCCGTCCAGCGGCGCGGCTACCCG
CCGTCGATGCGGGAGATCGGACAGGCGGTGGGCCTCTCCAGCACCTCGTCCGTCGCCCACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGCGCGTACGAGGTCCGCGGCTCCGACCAGCCGAGCACCCAGCCCG
CCGACACCACGGGCAAGCCCGCCGCCTCGTACGTGCCGCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTGTTCGTGCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCGGCCATCTGTGACGGCGACTGGGTCACCGTCCGGCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCCCACAAC
GCCGCCTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTGCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371