Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L1F30_RS16500 Genome accession   NZ_CP090959
Coordinates   3749659..3751023 (-) Length   454 a.a.
NCBI ID   WP_253357929.1    Uniprot ID   -
Organism   Simiduia sp. 21SJ11W-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3744659..3756023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F30_RS16475 (L1F30_16475) - 3746184..3746435 (+) 252 WP_253357924.1 hypothetical protein -
  L1F30_RS16480 (L1F30_16480) - 3746465..3746956 (+) 492 WP_253357925.1 hypothetical protein -
  L1F30_RS16485 (L1F30_16485) - 3746925..3747230 (+) 306 WP_253357926.1 hypothetical protein -
  L1F30_RS16490 (L1F30_16490) - 3747267..3748367 (+) 1101 WP_253357927.1 AI-2E family transporter -
  L1F30_RS16495 (L1F30_16495) - 3748364..3749524 (-) 1161 WP_253357928.1 GGDEF domain-containing protein -
  L1F30_RS16500 (L1F30_16500) radA 3749659..3751023 (-) 1365 WP_253357929.1 DNA repair protein RadA Machinery gene
  L1F30_RS17585 - 3751107..3751616 (+) 510 WP_305879912.1 type II secretion system protein -
  L1F30_RS16510 (L1F30_16510) - 3751641..3752783 (+) 1143 WP_253357930.1 DnaT-like ssDNA-binding domain-containing protein -
  L1F30_RS16515 (L1F30_16515) - 3752695..3753366 (+) 672 WP_253357931.1 replication protein P -
  L1F30_RS16520 (L1F30_16520) - 3753409..3754386 (+) 978 WP_253357932.1 glucosaminidase domain-containing protein -
  L1F30_RS16525 (L1F30_16525) - 3754759..3754968 (-) 210 WP_305879913.1 cold-shock protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48491.01 Da        Isoelectric Point: 6.8980

>NTDB_id=646690 L1F30_RS16500 WP_253357929.1 3749659..3751023(-) (radA) [Simiduia sp. 21SJ11W-1]
MAKAKMAFVCNDCGADYRKWQGQCSECQAWNTIVEIRLAPATSARAEQFSGFAGATTGKVQKLADISLDDLPRFSSGMEE
FDRVLGGGLVPGSVVLIGGHPGAGKSTLLLQTLCKLAETMPALYVTGEESLQQVAMRARRLQLPADKLSMLSETSIEQIA
AQAEAMRPRVMVVDSIQVMHMSDVQSAPGSVTQVRESAAFLTRFAKQTGTVLLLVGHVTKDGSLAGPKVLEHMIDCSILL
EGSHDSRYRTLRGNKNRFGAVNELGVFAMTEQGLREVTNPSAIFLQRAEDVASGSIVMVVWEGTRPLLVEVQALVDGSSL
GNPRRVAVGLDQNRLAMLLAVLHRHGGIMVGDQDVFVNVVGGVKVGETSVDLALLLAIVSSFRDNPLPQDLIAFGEVGLS
GEIRPVPSGQERLREAAKHGFKRAIVPKANAPKGGIAGMEIVTVKNLAEALEAM

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=646690 L1F30_RS16500 WP_253357929.1 3749659..3751023(-) (radA) [Simiduia sp. 21SJ11W-1]
GTGGCCAAGGCAAAAATGGCGTTTGTGTGTAATGACTGCGGTGCGGATTATCGCAAGTGGCAGGGCCAATGCAGTGAGTG
CCAGGCATGGAACACCATTGTTGAAATTCGCTTAGCGCCGGCCACATCTGCACGTGCCGAACAATTCAGTGGCTTTGCCG
GTGCCACCACCGGCAAAGTTCAAAAGCTTGCAGATATAAGCCTAGACGATTTGCCCCGCTTTAGCAGCGGCATGGAAGAG
TTCGACCGCGTGCTCGGCGGCGGCCTGGTGCCCGGTTCTGTGGTGTTAATTGGTGGCCACCCGGGTGCGGGCAAGTCTAC
CTTGTTGCTGCAAACCCTGTGCAAGCTCGCCGAAACCATGCCGGCGCTCTACGTCACCGGTGAGGAATCCTTACAACAGG
TGGCCATGCGTGCGCGCCGCTTGCAGTTGCCGGCCGATAAGCTGTCTATGTTGTCTGAAACCAGTATCGAACAAATTGCC
GCGCAAGCCGAGGCCATGCGCCCGAGGGTGATGGTGGTGGATTCCATTCAGGTTATGCACATGAGTGATGTGCAATCGGC
GCCGGGCTCGGTTACCCAGGTGCGGGAAAGCGCGGCATTTCTTACGCGCTTTGCCAAGCAAACGGGCACGGTGCTGCTGC
TGGTGGGCCACGTGACCAAAGACGGCTCGTTGGCCGGGCCCAAAGTGCTGGAGCACATGATTGACTGCTCTATTTTATTA
GAGGGCAGCCACGACTCACGTTACCGCACCCTGCGCGGCAACAAAAACCGCTTCGGGGCTGTGAACGAGCTGGGGGTGTT
CGCCATGACCGAACAGGGCCTGCGCGAGGTGACCAACCCTTCCGCCATTTTTTTACAGCGCGCCGAAGACGTGGCCTCGG
GCTCCATTGTGATGGTGGTGTGGGAGGGCACGCGCCCGCTACTGGTTGAAGTGCAGGCGCTGGTGGATGGCTCCTCACTG
GGCAATCCGCGCCGGGTGGCCGTGGGCCTGGATCAAAACCGCCTGGCCATGTTGCTCGCGGTATTGCACCGCCACGGGGG
CATTATGGTGGGCGATCAGGATGTCTTCGTGAATGTGGTGGGCGGTGTAAAGGTGGGCGAAACCAGTGTGGATTTGGCGC
TGCTGTTGGCCATTGTTTCAAGCTTTAGAGACAACCCCTTACCGCAAGATCTGATTGCCTTTGGCGAGGTGGGGCTCTCC
GGCGAGATCCGCCCTGTGCCCTCAGGCCAGGAGCGCCTGCGCGAGGCCGCCAAGCACGGTTTCAAGCGCGCCATAGTTCC
CAAAGCCAATGCCCCCAAAGGCGGAATTGCCGGCATGGAAATCGTGACAGTGAAGAATCTGGCCGAAGCGCTGGAGGCCA
TGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-222)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.253

100

0.487
  radA Streptococcus mitis SK321

44.298

100

0.445
  radA Streptococcus pneumoniae Rx1

45.116

94.714

0.427
  radA Streptococcus pneumoniae D39

45.116

94.714

0.427
  radA Streptococcus pneumoniae R6

45.116

94.714

0.427
  radA Streptococcus pneumoniae TIGR4

45.116

94.714

0.427
  radA Streptococcus mitis NCTC 12261

44.884

94.714

0.425