Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   L1F30_RS01505 Genome accession   NZ_CP090959
Coordinates   323737..324132 (+) Length   131 a.a.
NCBI ID   WP_253358525.1    Uniprot ID   -
Organism   Simiduia sp. 21SJ11W-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 318737..329132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F30_RS01480 (L1F30_01480) pilU 319232..320374 (+) 1143 WP_253358515.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  L1F30_RS01485 (L1F30_01485) ruvX 320388..320804 (-) 417 WP_253358517.1 Holliday junction resolvase RuvX -
  L1F30_RS01490 (L1F30_01490) - 320916..321509 (-) 594 WP_253358519.1 YqgE/AlgH family protein -
  L1F30_RS01495 (L1F30_01495) - 321560..322465 (-) 906 WP_253358521.1 energy transducer TonB -
  L1F30_RS01500 (L1F30_01500) gshB 322469..323437 (-) 969 WP_253358523.1 glutathione synthase -
  L1F30_RS01505 (L1F30_01505) pilG 323737..324132 (+) 396 WP_253358525.1 twitching motility response regulator PilG Regulator
  L1F30_RS01510 (L1F30_01510) pilH 324194..324556 (+) 363 WP_253358527.1 twitching motility response regulator PilH -
  L1F30_RS01515 (L1F30_01515) - 324588..325142 (+) 555 WP_253358529.1 chemotaxis protein CheW -
  L1F30_RS01520 (L1F30_01520) - 325213..327387 (+) 2175 WP_253358531.1 methyl-accepting chemotaxis protein -
  L1F30_RS01525 (L1F30_01525) - 327406..328275 (+) 870 WP_253358533.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14254.54 Da        Isoelectric Point: 7.8221

>NTDB_id=646672 L1F30_RS01505 WP_253358525.1 323737..324132(+) (pilG) [Simiduia sp. 21SJ11W-1]
MDVNLESLKVMVIDDSKTIRRTAETLLNKAGCTVITATDGFDALAKIADTRPDIIFVDIMMPRLDGYQTCALIKNNSEFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKTELLGAIQAHVGQAKAS

Nucleotide


Download         Length: 396 bp        

>NTDB_id=646672 L1F30_RS01505 WP_253358525.1 323737..324132(+) (pilG) [Simiduia sp. 21SJ11W-1]
ATGGACGTCAATCTGGAAAGCCTGAAAGTGATGGTGATCGACGATAGTAAAACCATTCGTCGCACCGCTGAAACCCTCCT
TAACAAGGCCGGCTGCACGGTAATTACCGCCACTGACGGTTTTGATGCACTGGCAAAAATCGCCGATACCCGGCCAGATA
TCATCTTTGTGGATATCATGATGCCCAGGCTCGACGGCTATCAAACCTGTGCGCTGATCAAGAACAACAGCGAGTTCAAA
TCAACGCCTGTGATCATGCTCTCGAGTAAAGACGGCCTGTTCGATAAGGCCAAAGGGCGCATTGTGGGGTCGGATCAATA
CCTGACCAAGCCCTTCTCAAAAACCGAACTGCTCGGCGCTATTCAGGCGCACGTGGGGCAGGCGAAAGCTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

95.42

0.718
  vicR Streptococcus mutans UA159

42.149

92.366

0.389