Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG710_RS16170 Genome accession   NZ_CP107834
Coordinates   3660169..3660798 (-) Length   209 a.a.
NCBI ID   WP_330239948.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3655169..3665798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS16140 (OG710_16165) - 3655710..3656132 (-) 423 WP_330239943.1 hypothetical protein -
  OG710_RS16145 (OG710_16170) ugpC 3656364..3657500 (-) 1137 WP_330239944.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  OG710_RS16155 (OG710_16180) - 3657819..3658775 (+) 957 WP_330239945.1 aminoglycoside phosphotransferase family protein -
  OG710_RS16160 (OG710_16185) - 3658861..3659538 (+) 678 WP_330239946.1 pentapeptide repeat-containing protein -
  OG710_RS16165 (OG710_16190) - 3659626..3660123 (-) 498 WP_330239947.1 hypothetical protein -
  OG710_RS16170 (OG710_16195) vraR 3660169..3660798 (-) 630 WP_330239948.1 response regulator transcription factor Regulator
  OG710_RS16175 (OG710_16200) - 3660795..3662108 (-) 1314 WP_330239949.1 sensor histidine kinase -
  OG710_RS16180 (OG710_16205) - 3662291..3662848 (+) 558 WP_330239950.1 heme-binding protein -
  OG710_RS16185 (OG710_16210) - 3662874..3663590 (+) 717 WP_330239951.1 ankyrin repeat domain-containing protein -
  OG710_RS16190 (OG710_16215) - 3663587..3664750 (+) 1164 WP_330239952.1 YncE family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22267.50 Da        Isoelectric Point: 6.2600

>NTDB_id=646672 OG710_RS16170 WP_330239948.1 3660169..3660798(-) (vraR) [Streptomyces sp. NBC_00525]
MTADRIRILLCDDHAVVRAGLLALLGSEPDIEVIGEAGSGEEAVALTARLTPDVVLMDLQLGSGIDGVEATRRISTGTGT
HVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRAPRPTLTDRERDILGQLS
RGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=646672 OG710_RS16170 WP_330239948.1 3660169..3660798(-) (vraR) [Streptomyces sp. NBC_00525]
ATGACCGCCGACCGCATCCGCATCCTCCTCTGCGACGACCACGCCGTCGTACGCGCCGGGCTCCTCGCCCTCCTCGGCAG
CGAACCCGACATCGAGGTCATCGGCGAGGCCGGCAGCGGCGAGGAGGCCGTCGCCCTCACCGCCCGGCTCACCCCCGACG
TCGTCCTGATGGACCTCCAGCTCGGCTCCGGCATCGACGGCGTCGAGGCCACCCGCCGCATCTCGACCGGCACCGGCACC
CACGTCCTCGTGCTCACCACGTACGACACCGACGCCGACATCACCCGCGCCATCGAGGCCGGCGCCACCGGCTACCTCCT
CAAGGCCGAACGCCCCGAGGAACTCTTCGCCGCCATCCGCTCCGCCGCCCAGGGCCGCACCACGCTCTCGCCGCCCGTCG
CCAGCCGCGTCATGGCCCGGATGCGCGCCCCGCGCCCCACCCTCACCGACCGCGAACGCGACATCCTCGGCCAGCTCTCC
CGAGGCCTCGGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAGGCCACGGTCAAGACCCACCTCGGCCGGATCTA
CGACAAGCTCGGCGTGGACACCCGCGCCGGAGCCGTGGCCGTCGCCAAGGAGCAGCGCCTGCTGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.462

99.522

0.383