Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG710_RS15600 Genome accession   NZ_CP107834
Coordinates   3546194..3547606 (-) Length   470 a.a.
NCBI ID   WP_330239868.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3541194..3552606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS15575 (OG710_15600) - 3541206..3541934 (-) 729 WP_330239866.1 hypothetical protein -
  OG710_RS15580 (OG710_15605) - 3541922..3542470 (-) 549 WP_111330130.1 SigE family RNA polymerase sigma factor -
  OG710_RS15585 (OG710_15610) - 3542828..3543730 (-) 903 WP_330239867.1 A/G-specific adenine glycosylase -
  OG710_RS15590 (OG710_15615) - 3544024..3544827 (+) 804 WP_330242261.1 hypothetical protein -
  OG710_RS15595 (OG710_15620) disA 3544923..3546047 (-) 1125 WP_111330132.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG710_RS15600 (OG710_15625) radA/sms 3546194..3547606 (-) 1413 WP_330239868.1 DNA repair protein RadA Machinery gene
  OG710_RS15605 (OG710_15630) - 3547743..3549569 (+) 1827 WP_330239869.1 hypothetical protein -
  OG710_RS15610 (OG710_15635) - 3549592..3550458 (-) 867 WP_330239870.1 hypothetical protein -
  OG710_RS15615 (OG710_15640) - 3550524..3551531 (+) 1008 WP_330239871.1 Ppx/GppA phosphatase family protein -
  OG710_RS15620 (OG710_15645) - 3551619..3552452 (+) 834 WP_111330135.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49502.63 Da        Isoelectric Point: 8.2639

>NTDB_id=646669 OG710_RS15600 WP_330239868.1 3546194..3547606(-) (radA/sms) [Streptomyces sp. NBC_00525]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECHAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRMRADRIRAISDHLYLAAETDLSAV
LAHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMRVTEVADMGDALRALPRRSRAQAPQEDGVRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=646669 OG710_RS15600 WP_330239868.1 3546194..3547606(-) (radA/sms) [Streptomyces sp. NBC_00525]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGTTGCACCGAATGCGGCTGGACCACCGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCATGCCTGGGGGACGGTCGAGGAGTTCGGCGGTGCCCCCGCCGTGCGGACGACGGCGGCGG
GCCGGGTCTCCTCCGCCGCGCTGCCCATCGGCCAGGTGGACAGCCGGCAGGCCACCGCCCGGCCGACCGGCGTGGGCGAG
CTGGACCGGGTGCTCGGCGGCGGTCTGGTGCCGGGTGCCGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGGAAGTCCAC
GCTGCTGCTGGACGTGGCGGCGAAGGCGGCGAGCGACGAGCACCGGACGCTGTACGTGACCGGTGAGGAGTCGGCCTCGC
AGGTCCGGATGCGGGCCGACCGCATCCGGGCGATCAGCGACCATCTCTATCTCGCGGCGGAGACGGATCTGTCGGCGGTG
CTCGCCCATCTCGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGAGGG
CGCGCCGGGCGGGATGGCGCAGGTCCGCGAGGTGGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACGC
TGCTCGTCGGCCATGTCACCAAGGAGGGCGCCATCGCCGGGCCCCGGCTCCTGGAGCATCTGGTGGACGTGGTGCTGTCG
TTCGAGGGCGACCGCCATGCCCGGCTGCGCCTGGTGCGCGGCGTCAAGAACCGGTACGGGGCGACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGATCCGTCCGGCCTGTTCCTGACCCGGCGCGACGAGCCGGTGC
CGGGTACCTGCCTGACCGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACGTCGGGCCTGGAGACCTCGCGGGTGTCGATGATGCTCGCGGTCCTGGAGCAGCGGGG
CCGGATCAGTTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTCTCCGAGCCGGCCGCGGACC
TGGCCATCGCGCTGGCGCTGGCGAGCGCGGCGAGCGACACACCGCTGCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGACGGGTCACGGGGGTGCAGCGCCGGCTCGCCGAGGCGCACCGCCTGGGCTTCACGCACGCGCT
GGTCCCGACCGATCCGGGCAAGGTCCCGGCCGGGATGCGGGTGACGGAGGTGGCCGACATGGGCGACGCGCTCAGGGCGC
TCCCGCGCCGCTCCCGCGCACAGGCCCCGCAGGAGGACGGCGTACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus pneumoniae Rx1

42.637

96.809

0.413
  radA Streptococcus pneumoniae D39

42.637

96.809

0.413
  radA Streptococcus pneumoniae R6

42.637

96.809

0.413
  radA Streptococcus pneumoniae TIGR4

42.637

96.809

0.413
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.056

91.277

0.402