Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L1O50_RS08715 Genome accession   NZ_CP090955
Coordinates   1884319..1885692 (-) Length   457 a.a.
NCBI ID   WP_010372293.1    Uniprot ID   A0A0D1KBD6
Organism   Weissella cibaria strain CXO-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879319..1890692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O50_RS08705 (L1O50_08705) gltX 1881624..1883120 (-) 1497 WP_010372298.1 glutamate--tRNA ligase -
  L1O50_RS08710 (L1O50_08710) - 1883200..1884303 (-) 1104 WP_029237460.1 PIN/TRAM domain-containing protein -
  L1O50_RS08715 (L1O50_08715) radA 1884319..1885692 (-) 1374 WP_010372293.1 DNA repair protein RadA Machinery gene
  L1O50_RS08720 (L1O50_08720) - 1885707..1886249 (-) 543 WP_010372290.1 dUTP diphosphatase -
  L1O50_RS08725 (L1O50_08725) - 1886345..1886623 (-) 279 WP_010372287.1 GNAT family N-acetyltransferase -
  L1O50_RS08730 (L1O50_08730) - 1886667..1887209 (-) 543 WP_010372283.1 C40 family peptidase -
  L1O50_RS08735 (L1O50_08735) - 1887270..1888157 (-) 888 WP_010372279.1 LysM peptidoglycan-binding domain-containing protein -
  L1O50_RS08740 (L1O50_08740) - 1888565..1889572 (-) 1008 WP_010372276.1 zinc-binding alcohol dehydrogenase family protein -
  L1O50_RS08745 (L1O50_08745) budA 1889658..1890377 (-) 720 WP_010372273.1 acetolactate decarboxylase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49224.36 Da        Isoelectric Point: 5.3902

>NTDB_id=646653 L1O50_RS08715 WP_010372293.1 1884319..1885692(-) (radA) [Weissella cibaria strain CXO-1]
MAKTKTQFVCSNCGYVSQRYMGRCSNCGAWGTFVEEVIQPEKADRKSRVNLAGQIAKVERLGQVSIEETPRVDTQIDEFN
RVLGGGIVPGSMVLIGGDPGIGKSTLLLQVSSQLANSGGTILYVAGEESASQIKLRAERLGVRGDADFFLYPETDMSQIR
KAIDETKPDYVIIDSIQTMQQPDVSSAVGSVAQIRETTAELLQIAKTNGITIFIVGHVTKDGAIAGPKILEHMVDTVLYF
EGDNQRSFRLLRAVKNRFGSTNELGVFEMNEGGLAEVTNPSGLFLEDRLSDASGSAVVVAMEGSRPILVEVQALVTPTVF
GNAQRTAAGIDRNRISLLMAVLEKRANLLLQNQDAYVRAAGGVKLDEPAIDLAVAVAIASSYRDKGTRATDAFVGEIGLT
GEIRRVPNVVDRILEAKKLGFKRVFVPQHSVDTMKDIPGIQIIGVATLADALRLALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=646653 L1O50_RS08715 WP_010372293.1 1884319..1885692(-) (radA) [Weissella cibaria strain CXO-1]
ATGGCAAAAACAAAAACCCAGTTTGTATGTTCTAACTGTGGGTATGTTTCACAACGTTACATGGGACGTTGCTCTAACTG
TGGTGCCTGGGGAACGTTCGTTGAAGAAGTTATTCAACCAGAAAAGGCGGACCGAAAGTCACGCGTTAACCTGGCTGGAC
AAATTGCGAAGGTTGAGCGATTAGGCCAAGTTAGCATCGAGGAGACGCCACGTGTCGATACGCAAATTGATGAATTTAAC
CGGGTACTTGGTGGCGGAATCGTACCTGGGTCAATGGTTTTGATCGGTGGTGACCCAGGGATTGGAAAGTCAACGTTGCT
ACTTCAGGTATCAAGTCAGTTGGCAAATTCAGGCGGAACGATTTTGTACGTCGCTGGAGAAGAAAGTGCTTCGCAGATTA
AGTTGCGAGCAGAACGCTTGGGAGTTCGTGGCGATGCGGATTTCTTCTTGTACCCAGAAACGGACATGAGCCAAATTCGT
AAGGCAATCGATGAAACAAAGCCGGATTATGTCATTATCGACTCAATCCAAACCATGCAACAACCAGATGTTTCATCGGC
GGTTGGATCAGTTGCACAAATTCGTGAGACGACCGCCGAATTGCTCCAAATCGCGAAGACGAACGGGATTACAATTTTTA
TTGTTGGTCACGTAACCAAGGATGGTGCCATCGCTGGACCAAAGATTTTGGAACACATGGTGGATACGGTACTTTACTTT
GAGGGTGATAATCAGCGTAGTTTCCGGTTGCTACGAGCTGTTAAGAATCGATTCGGTTCAACAAATGAGTTAGGGGTCTT
TGAAATGAACGAGGGTGGTTTGGCAGAAGTGACGAACCCATCTGGTTTATTCTTGGAAGACCGGCTCTCAGACGCCAGTG
GTTCGGCAGTGGTCGTTGCGATGGAAGGCTCTCGACCAATTTTGGTTGAAGTCCAGGCGTTGGTGACACCAACCGTCTTT
GGTAATGCCCAACGCACAGCAGCCGGCATTGATCGCAATCGTATTTCACTGTTGATGGCTGTCTTAGAAAAGCGTGCAAA
CTTGTTGTTGCAGAACCAGGATGCCTATGTGCGTGCTGCAGGCGGTGTAAAGCTAGACGAACCAGCAATCGACTTGGCTG
TTGCGGTTGCAATTGCTTCGAGTTACCGGGATAAGGGAACACGGGCAACTGACGCATTTGTCGGTGAAATTGGTTTGACT
GGTGAAATCCGGCGGGTGCCAAATGTGGTTGATCGCATTCTTGAAGCGAAAAAACTTGGTTTCAAACGAGTATTTGTGCC
ACAGCATTCAGTTGATACAATGAAAGATATACCGGGCATTCAAATTATCGGTGTGGCCACATTGGCAGATGCTTTACGGT
TGGCATTAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KBD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.576

99.125

0.63
  radA Streptococcus mitis SK321

63.576

99.125

0.63
  radA Streptococcus pneumoniae Rx1

63.576

99.125

0.63
  radA Streptococcus pneumoniae D39

63.576

99.125

0.63
  radA Streptococcus pneumoniae R6

63.576

99.125

0.63
  radA Streptococcus pneumoniae TIGR4

63.576

99.125

0.63
  radA Bacillus subtilis subsp. subtilis str. 168

59.737

100

0.597