Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG710_RS08450 Genome accession   NZ_CP107834
Coordinates   1896987..1897670 (-) Length   227 a.a.
NCBI ID   WP_111331670.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1891987..1902670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS08435 (OG710_08450) - 1893925..1894908 (+) 984 WP_330238753.1 hypothetical protein -
  OG710_RS08440 (OG710_08455) - 1894994..1895308 (-) 315 WP_330238754.1 hypothetical protein -
  OG710_RS08445 (OG710_08460) clpX 1895532..1896830 (-) 1299 WP_330238755.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG710_RS08450 (OG710_08465) clpP 1896987..1897670 (-) 684 WP_111331670.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG710_RS08455 (OG710_08470) - 1897750..1898355 (-) 606 WP_185993056.1 ATP-dependent Clp protease proteolytic subunit -
  OG710_RS08460 (OG710_08475) tig 1898622..1900013 (-) 1392 WP_330238756.1 trigger factor -
  OG710_RS08475 (OG710_08490) - 1900575..1900769 (-) 195 WP_330238757.1 hypothetical protein -
  OG710_RS08480 (OG710_08495) - 1901235..1902338 (+) 1104 WP_199563824.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24792.17 Da        Isoelectric Point: 4.6747

>NTDB_id=646653 OG710_RS08450 WP_111331670.1 1896987..1897670(-) (clpP) [Streptomyces sp. NBC_00525]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEELLAKHSTTPLDKIRDDIERDKILTAEDALAYGLVDQIVSTRKSASGALA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=646653 OG710_RS08450 WP_111331670.1 1896987..1897670(-) (clpP) [Streptomyces sp. NBC_00525]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACGGGCCCGCAGGTGGACAACCGCTA
CATCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCCATCTACATCAACAGCCCCGGCGGCTCGTTCACGGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCCGTGCTGCTCGCCGCGGGCACGC
CGGGCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCCGCCAACGAGATCCTGCGCATGCGGACCCAGCTGGAGGAGCTGCTCGCCAAGCACTCCACCACGCC
GCTGGACAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACCGCCGAGGACGCCCTCGCCTACGGCCTCGTCGACC
AGATCGTGTCGACGCGCAAGAGCGCGTCCGGAGCGCTCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.26

0.401
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

44.737

83.7

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus pneumoniae Rx1

43.75

84.581

0.37
  clpP Streptococcus pneumoniae D39

43.75

84.581

0.37
  clpP Streptococcus pneumoniae R6

43.75

84.581

0.37
  clpP Streptococcus pneumoniae TIGR4

43.75

84.581

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37