Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG710_RS07875 Genome accession   NZ_CP107834
Coordinates   1762063..1763994 (+) Length   643 a.a.
NCBI ID   WP_111331884.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00525     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757063..1768994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG710_RS07840 (OG710_07855) - 1757136..1757696 (+) 561 WP_330238674.1 DinB family protein -
  OG710_RS07860 (OG710_07875) - 1758349..1758654 (+) 306 WP_111331891.1 YtxH domain-containing protein -
  OG710_RS07865 (OG710_07880) - 1758732..1760177 (+) 1446 WP_330238675.1 FGGY family carbohydrate kinase -
  OG710_RS07870 (OG710_07885) rcrP 1760330..1762063 (+) 1734 WP_330238676.1 ABC transporter ATP-binding protein Regulator
  OG710_RS07875 (OG710_07890) rcrQ 1762063..1763994 (+) 1932 WP_111331884.1 ABC transporter ATP-binding protein Regulator
  OG710_RS07880 (OG710_07895) rpoS 1764060..1765049 (-) 990 WP_241989946.1 RNA polymerase sigma factor Regulator
  OG710_RS07885 (OG710_07900) dnaG 1765179..1767089 (-) 1911 WP_330238677.1 DNA primase -
  OG710_RS07890 (OG710_07905) - 1767204..1768463 (-) 1260 WP_330238678.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69156.57 Da        Isoelectric Point: 5.1122

>NTDB_id=646650 OG710_RS07875 WP_111331884.1 1762063..1763994(+) (rcrQ) [Streptomyces sp. NBC_00525]
MAGPGGRMMAGGAPTERSMDFKGSSKRLLKRFAAEKNTLYVMLLAVALSVGLSVVGPKILGKATDLVFAGVIGREMDAGT
TKEQAVEGLRRGDSDLADMLASVDFTPGQGIDFGAVGDVLLLALAVYVGAGLLMLVSTRLSIRVINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSVLTIIGVLVMMFWISPLLALVALVTVPLSVVVATRVGKR
SQPQFVRQWQVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEPDPAKGAAQHPGILRGSVAL
ENVAFRYDPEKPLIEDLSLHVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAKMSRADLRSGIGMVLQD
TWLFGGTIAENIAYGAPGDVGRERIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAEGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=646650 OG710_RS07875 WP_111331884.1 1762063..1763994(+) (rcrQ) [Streptomyces sp. NBC_00525]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGGTCCTCCAAGCG
GCTGCTGAAGCGCTTCGCCGCCGAGAAGAACACGCTGTACGTGATGCTGCTCGCGGTCGCGCTCAGCGTCGGGCTCTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCGACGGACCTGGTGTTCGCGGGGGTCATCGGCCGCGAGATGGACGCCGGGACG
ACCAAGGAGCAGGCCGTGGAGGGTCTGCGCCGCGGCGACAGCGATCTGGCCGACATGCTGGCGTCGGTGGACTTCACGCC
GGGGCAGGGCATCGACTTCGGCGCGGTGGGCGACGTCCTGCTGCTGGCGCTGGCGGTGTACGTCGGCGCCGGGCTGCTGA
TGCTGGTGTCCACGCGGCTGTCGATCCGGGTCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACCAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGTGCCAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAATGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGGTGCTGACGATCATCGGCGTGCTGGTGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTCTCGGTGGTCGTGGCGACGCGGGTCGGCAAGCGC
TCGCAGCCGCAGTTCGTGCGGCAGTGGCAGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTATGTGCTGATCGCCGTG
GTGGGCGGCCTGCGGGTGGCCTCCGGCGCGCTGTCGATCGGCGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGGGTGGCGTCGGCGGAGCGGATCTTCGAGCTGC
TGGACGCCGACGAGCAGGAGCCCGACCCGGCGAAGGGCGCGGCCCAGCACCCCGGCATCCTGCGCGGCAGCGTCGCGCTG
GAGAACGTGGCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGCACGTCGAACCGGGCCACACGGT
GGCGATCGTCGGTCCCACGGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCC
GGATCACGCTGGACGGCGTGGACATCGCGAAGATGTCGCGGGCGGACCTGCGCTCGGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGGGCGCCCGGTGACGTCGGCCGGGAGCGGATCGAGGA
GGCGGCGCGGGCCGCCCACGCCGACCGCTTCATCCGGACCCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCT
CCGGGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCCTTCCTGTCCGACCCGGTGATACTGGTGCTCGAC
GAGGCGACCAGCTCCGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGGGCCTGGCCCACGGCCGGACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTGGTCATGGAGAACGGCTCGATCGTGGAAC
AGGGCACGCACGACGAACTGCTGGCGGCCGAGGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCGGTCGCC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.774

82.426

0.361