Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS33_RS26470 Genome accession   NZ_CP107819
Coordinates   5910621..5911355 (-) Length   244 a.a.
NCBI ID   WP_330332899.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5905621..5916355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS26450 (OHS33_26450) - 5905895..5907334 (+) 1440 WP_330332895.1 gamma-aminobutyraldehyde dehydrogenase -
  OHS33_RS26455 (OHS33_26455) - 5907463..5908641 (+) 1179 WP_330332896.1 spermidine/putrescine ABC transporter substrate-binding protein -
  OHS33_RS26460 (OHS33_26460) - 5908753..5909250 (+) 498 WP_330332897.1 hypothetical protein -
  OHS33_RS26465 (OHS33_26465) - 5909240..5910454 (-) 1215 WP_330332898.1 serine hydrolase domain-containing protein -
  OHS33_RS26470 (OHS33_26470) vraR 5910621..5911355 (-) 735 WP_330332899.1 response regulator transcription factor Regulator
  OHS33_RS26475 (OHS33_26475) - 5911352..5912470 (-) 1119 WP_330335214.1 histidine kinase -
  OHS33_RS26480 (OHS33_26480) - 5912566..5913264 (-) 699 WP_330332900.1 glycerophosphodiester phosphodiesterase -
  OHS33_RS26485 (OHS33_26485) - 5913286..5914311 (-) 1026 WP_330332901.1 adenosine deaminase -
  OHS33_RS26490 (OHS33_26490) - 5914422..5915192 (+) 771 WP_330332902.1 DUF4190 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 25452.00 Da        Isoelectric Point: 4.8837

>NTDB_id=646613 OHS33_RS26470 WP_330332899.1 5910621..5911355(-) (vraR) [Streptomyces sp. NBC_00536]
MTIRVVVADDQELVRSGFAMILDVQEDIEVVAEVGDGAAAVAAVRDLAPDVALLDVRMPVMDGIEACRTISARSACRTVM
LTTFDADEYVYEALHAGASGFLLKDVRRDDLVHAVRVVAAGESLLAPSVARRLIEEYTAATAHGRRGAAAESAAAAEGAR
RLEGLTARERETLLHLGRGLSNAEIAAALVVSEHTVKSHVGNVLAKLGLRDRIQAVICAYETGLIAAGTTAPAGCPSGVS
PSGE

Nucleotide


Download         Length: 735 bp        

>NTDB_id=646613 OHS33_RS26470 WP_330332899.1 5910621..5911355(-) (vraR) [Streptomyces sp. NBC_00536]
TTGACGATCCGTGTGGTGGTGGCGGACGACCAGGAGCTGGTGCGCAGCGGTTTCGCGATGATCCTGGACGTCCAGGAGGA
CATCGAGGTCGTCGCGGAGGTCGGTGACGGCGCGGCGGCGGTGGCCGCGGTGCGGGACCTGGCGCCGGACGTGGCGCTGC
TGGACGTCCGGATGCCGGTCATGGACGGGATCGAGGCGTGCCGGACGATCTCGGCACGGAGCGCCTGCCGGACGGTGATG
CTGACGACCTTCGACGCGGACGAGTACGTGTACGAGGCGCTGCACGCGGGGGCCAGCGGCTTCCTGCTGAAGGACGTGCG
GCGGGACGATCTGGTGCACGCGGTACGGGTGGTGGCGGCGGGCGAGTCCCTGCTGGCCCCGTCGGTCGCGCGGCGACTGA
TCGAGGAGTACACGGCAGCGACGGCGCACGGCCGGCGCGGGGCGGCGGCCGAGTCGGCCGCGGCCGCCGAGGGGGCGCGG
CGGCTGGAGGGACTGACGGCCCGGGAGCGGGAGACCCTGCTGCATCTGGGGCGGGGGCTGTCGAACGCGGAGATCGCGGC
GGCGCTGGTGGTGAGCGAACACACGGTCAAGTCGCATGTGGGGAACGTGCTGGCGAAGCTCGGGCTGCGGGACCGGATCC
AGGCTGTGATCTGCGCGTACGAGACGGGGCTGATCGCGGCCGGGACGACGGCTCCCGCCGGTTGTCCCTCTGGGGTTTCT
CCCTCTGGGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-219)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.265

92.623

0.373