Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZT96_RS11080 Genome accession   NZ_CP090941
Coordinates   2309197..2310570 (-) Length   457 a.a.
NCBI ID   WP_002498829.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain HAF242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2304197..2315570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZT96_RS11065 (LZT96_11065) cysE 2305207..2305836 (-) 630 WP_002438669.1 serine O-acetyltransferase -
  LZT96_RS11070 (LZT96_11070) gltX 2306221..2307675 (-) 1455 WP_254582806.1 glutamate--tRNA ligase -
  LZT96_RS11075 (LZT96_11075) - 2308085..2309143 (-) 1059 WP_002498828.1 PIN/TRAM domain-containing protein -
  LZT96_RS11080 (LZT96_11080) radA 2309197..2310570 (-) 1374 WP_002498829.1 DNA repair protein RadA Machinery gene
  LZT96_RS11085 (LZT96_11085) - 2311061..2313514 (-) 2454 WP_001832300.1 ATP-dependent Clp protease ATP-binding subunit -
  LZT96_RS11090 (LZT96_11090) - 2313528..2314535 (-) 1008 WP_077755964.1 protein arginine kinase -
  LZT96_RS11095 (LZT96_11095) - 2314525..2315088 (-) 564 WP_001832265.1 UvrB/UvrC motif-containing protein -
  LZT96_RS11100 (LZT96_11100) - 2315109..2315570 (-) 462 WP_001832288.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50289.90 Da        Isoelectric Point: 7.5278

>NTDB_id=646595 LZT96_RS11080 WP_002498829.1 2309197..2310570(-) (radA) [Staphylococcus epidermidis strain HAF242]
MAKKKVIFECMACGYQSPKWMGKCLNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKQR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=646595 LZT96_RS11080 WP_002498829.1 2309197..2310570(-) (radA) [Staphylococcus epidermidis strain HAF242]
ATGGCCAAGAAAAAAGTAATATTCGAATGTATGGCATGTGGCTATCAATCTCCTAAGTGGATGGGCAAGTGCCTTAACTG
CGGTGCGTGGAATCAAATGGAAGAAATAGTAGAAAAGGTTGCTCATCCTAAACATGGTGTAAAAACAAAAGAAACAGCAG
GTAAGGTACAAAAGTTAAATAGTGTTAAGCATGAAGCTACCCCTAGATTACTTACAGAATCAAAGGAATTTAACCGTGTT
TTAGGTGGAGGTATTGTAAGTGGTTCGTTAGTACTAATAGGTGGAGACCCAGGTATTGGTAAGTCGACTTTATTGCTACA
AATTTGTGCTGCGCTGTCACAAAATAAGAATGTTTTATATATTACTGGTGAGGAATCTATTAATCAAACTAAGTTGCGCG
CTGATCGTTTGGAAGAAGATTCTAGTCATCTTAATGTTTTAGCCGAAACTGATTTAGAAGTGATACATCAAACTGTAAAA
GAAGAGAGACCTGACTTACTTGTTGTTGATTCGATTCAAACAATCTATCATCCGGAAATTAGTTCCGCACCTGGATCGGT
ATCACAAGTAAGAGAGAGTACGCAAAGTTTAATGAACATTGCTAAACAAATGAATATTGCCACATTTATTGTGGGACACG
TAACAAAAGAAGGACAAATCGCCGGACCAAGATTATTGGAACATATGGTTGATACAGTTCTTTATTTTGAAGGAGATGAG
CATCACGCATATCGTATCCTTAGAGCAGTAAAAAATAGATTTGGTTCTACAAATGAGATGGGGATTTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTACTTAATCCTTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCGGGCTCTACAATCG
TCCCCACTATGGAAGGAACAAGACCACTACTCATTGAAGTCCAAGCGCTTGTTACACCAACAACATTTAATAATCCTAGA
CGAATGGCTACAGGTATAGATCATAATCGATTAAGTTTACTTATGGCGGTTCTAGAAAAAAAGGAAAACTATTTACTCCA
ACAACAAGATGCCTATATTAAAGTAGCAGGTGGCGTCAAATTAACAGAACCTGCTGTTGATTTAAGCATTATTGTTGCGA
CAGCTTCAAGCTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTGTGGGTGAAGTTGGATTAACAGGTGAAGTACGC
AGAGTATCTCGCATAGAGCAACGTGTTCAAGAAGCGGCCAAACTAGGGTTTAAAAGAGCTATTATTCCACAGACAAATAT
TGGAGGTTGGACATTCCCAGAAGGCATCCAAGTCGTTGGTGTTTCATCAGTACATGAAGCTTTGAAATATGCATTACATT
CAAAACAGCGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(71-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

99.781

0.656
  radA Streptococcus pneumoniae Rx1

60.579

98.249

0.595
  radA Streptococcus pneumoniae D39

60.579

98.249

0.595
  radA Streptococcus pneumoniae R6

60.579

98.249

0.595
  radA Streptococcus pneumoniae TIGR4

60.579

98.249

0.595
  radA Streptococcus mitis NCTC 12261

60.579

98.249

0.595
  radA Streptococcus mitis SK321

60.579

98.249

0.595