Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   SMGD1_RS04020 Genome accession   NZ_AFRZ01000001
Coordinates   847120..848922 (+) Length   600 a.a.
NCBI ID   WP_008338773.1    Uniprot ID   B6BM88
Organism   Sulfurimonas gotlandica GD1     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 842120..853922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMGD1_RS04005 (SMGD1_0803) nhaD 843758..845110 (-) 1353 WP_008339052.1 sodium:proton antiporter NhaD -
  SMGD1_RS04010 (SMGD1_0804) nadB 845107..846555 (-) 1449 WP_008338768.1 L-aspartate oxidase -
  SMGD1_RS14710 (SMGD1_0805) - 846555..846701 (-) 147 WP_154645653.1 hypothetical protein -
  SMGD1_RS04015 (SMGD1_0806) - 846684..847130 (+) 447 WP_008338701.1 hypothetical protein -
  SMGD1_RS04020 (SMGD1_0807) uvrC 847120..848922 (+) 1803 WP_008338773.1 excinuclease ABC subunit UvrC Machinery gene
  SMGD1_RS04025 (SMGD1_0808) - 848989..849402 (+) 414 WP_008338993.1 PAS domain S-box protein -
  SMGD1_RS04030 (SMGD1_0809) - 849412..851106 (+) 1695 WP_008338750.1 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69375.46 Da        Isoelectric Point: 9.5928

>NTDB_id=64658 SMGD1_RS04020 WP_008338773.1 847120..848922(+) (uvrC) [Sulfurimonas gotlandica GD1]
MTLKQTIQQLPDSAGIYQYFDKNGHLLYIGKAKNLQKRVKSYFNFTPELKANSNLSLRITKMIKQTVSMSYIVVNSEHDA
LILENSLIKQLNPKYNILLRDDKTYPYIYIDNSQKYPRFDITRKIIKAADIKYFGPYSVGARDILDSVYELCKLVQKKGC
LKSKKLCLYHQIDKCLGPCELPISDARYKQELDLAFELIQNKKQLIKLLEEKMFFYAQNMRFEEAGEIRDRIQRITRSEI
KSEIDFATKENYDIFVIQNSESRAVIVRIFMRDGKIISSTHDYIQLNEGYDEDELYQRVLLDFYSKEKPPIIAPILVASE
FENLQVIEQHLSTVFEKKASIKIPKQGNKKQLIDLAILNAKELLKKDKNSIDTKLLDDLKELLLLERLPKRVEVFDNSHM
AGVATVGAMIVYEDGKFDKKSYRTYHLEAKDEYAQMRETLTRRVESFSKNSPPDLWIIDGGATLLKLASEIVDSCGVFID
IIAISKEKIDAKAHRAKGKADDIIHTKDNIFKLKHSDKRLQWTQNLRDEAHRSAINFHKKTKLKLDNESKLLTLKGISGA
KVKKLLNHFGTFEALKTLTIEEIGSILNTKDANVIKNIYF

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=64658 SMGD1_RS04020 WP_008338773.1 847120..848922(+) (uvrC) [Sulfurimonas gotlandica GD1]
ATGACTCTTAAACAAACCATACAACAACTCCCAGACTCTGCCGGTATCTACCAGTATTTTGATAAAAATGGTCATTTACT
CTACATCGGAAAAGCTAAAAACCTGCAAAAAAGAGTAAAAAGCTACTTTAACTTTACACCGGAGCTAAAAGCAAACTCAA
ATCTTTCACTTAGAATAACTAAGATGATTAAGCAGACTGTCTCAATGAGCTACATAGTGGTTAACTCAGAACACGATGCT
CTTATACTTGAAAACTCACTTATAAAGCAGTTAAACCCTAAGTACAACATCCTCCTGCGTGATGATAAAACATACCCGTA
TATCTATATAGACAACTCTCAAAAATATCCAAGATTTGATATAACAAGAAAAATCATAAAAGCTGCAGATATTAAGTACT
TTGGTCCATACTCGGTTGGAGCTAGAGATATTTTAGATTCTGTTTATGAGCTGTGTAAACTTGTTCAAAAAAAAGGGTGT
TTAAAGTCAAAAAAGCTATGTTTATATCATCAGATAGATAAATGCTTAGGACCATGTGAGCTTCCCATCTCAGATGCAAG
ATATAAACAAGAGTTAGATTTGGCATTTGAATTGATTCAAAATAAAAAACAACTAATTAAACTACTAGAAGAAAAAATGT
TTTTTTATGCCCAAAATATGAGGTTTGAAGAAGCAGGTGAAATCAGAGACAGAATCCAACGAATTACTCGCTCAGAGATT
AAGAGTGAAATCGATTTTGCCACCAAAGAAAACTACGATATTTTTGTTATACAAAATTCTGAGTCAAGAGCAGTGATAGT
AAGAATATTTATGAGAGACGGGAAAATAATCTCATCAACTCACGACTATATACAACTTAATGAAGGTTATGATGAAGATG
AGCTATATCAAAGAGTTCTTTTGGATTTTTATTCAAAAGAAAAACCACCTATTATAGCACCTATATTAGTAGCATCTGAG
TTTGAAAATTTGCAAGTAATAGAGCAGCATCTAAGCACTGTTTTTGAGAAAAAAGCCAGCATAAAAATTCCAAAACAAGG
AAACAAAAAACAGTTAATTGATTTAGCAATTTTAAATGCCAAAGAGCTTCTCAAAAAAGATAAAAACTCCATAGACACTA
AACTTCTAGATGATTTAAAAGAACTTTTATTACTAGAGCGTCTTCCAAAAAGAGTAGAAGTTTTTGACAATTCACATATG
GCAGGAGTCGCGACTGTTGGGGCGATGATAGTCTATGAGGATGGGAAATTTGATAAGAAAAGCTACAGAACCTATCATTT
AGAAGCAAAGGATGAATATGCCCAGATGCGGGAAACTCTCACAAGAAGAGTTGAAAGTTTTTCTAAAAATTCTCCTCCAG
ATTTATGGATAATTGATGGAGGAGCAACACTTTTAAAACTGGCATCTGAAATTGTAGACTCTTGTGGTGTCTTTATAGAT
ATTATAGCAATTTCAAAAGAAAAAATAGATGCCAAGGCTCATAGAGCTAAAGGAAAAGCTGATGATATTATTCATACAAA
AGATAATATTTTTAAACTTAAACACTCAGATAAAAGACTCCAATGGACTCAAAATTTAAGAGATGAAGCACACAGAAGTG
CTATAAACTTTCATAAAAAAACAAAACTTAAACTTGATAATGAGAGCAAACTTCTCACACTAAAAGGGATATCTGGAGCA
AAGGTGAAGAAACTACTCAATCATTTTGGAACATTCGAAGCCCTAAAAACCTTAACCATAGAAGAAATAGGTTCTATTTT
AAATACAAAAGATGCAAATGTAATTAAAAATATTTACTTCTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(381-535)

UvrB/uvrC motif (UVR)

(203-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6BM88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.256

97.833

0.492

Multiple sequence alignment